Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.7e-97 359.4 183 100.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.7e-94 349.4 183 96.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.4e-88 327.8 183 90.7
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.7e-87 325.5 183 90.2
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 4.0e-83 311.6 180 90.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 6.8e-83 310.8 179 87.7
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-81 306.2 178 87.6
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.4e-80 302.4 179 87.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 4.5e-79 298.1 178 84.3
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.9e-79 297.7 178 84.8
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.8e-78 295.0 178 83.1
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.8e-78 295.0 178 83.1
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 8.6e-78 293.9 178 84.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.5e-77 293.1 178 84.8
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.5e-77 292.4 178 83.7
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 9.5e-77 290.4 178 81.5
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.1e-76 289.3 179 83.8
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.1e-76 289.3 176 82.4
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 6.1e-76 287.7 179 82.7
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.4e-75 286.6 167 85.6
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.3e-75 285.8 180 81.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.3e-75 285.8 180 81.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.0e-75 285.0 178 82.6
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.0e-75 285.0 178 80.9
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.0e-75 285.0 178 80.9
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 8.9e-75 283.9 179 80.4
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.0e-74 282.7 180 81.1
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.0e-74 282.7 180 81.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 2.6e-74 282.3 172 81.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.6e-74 282.3 173 82.1
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 5.8e-74 281.2 172 81.4
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.8e-74 281.2 180 81.1
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 7.5e-74 280.8 176 81.2
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 9.8e-74 280.4 173 81.5
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.8e-74 280.4 173 81.5
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 9.8e-74 280.4 179 79.9
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.7e-73 279.6 175 81.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.2e-73 279.3 180 79.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.2e-73 279.3 179 81.6
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 2.9e-73 278.9 178 79.2
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 2.9e-73 278.9 175 78.9
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.9e-73 278.9 172 80.8
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.9e-73 278.1 172 80.8
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.4e-73 277.7 173 80.9
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.8e-72 276.2 180 77.8
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-72 276.2 180 77.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.8e-72 276.2 178 79.2
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.4e-72 275.8 179 78.8
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.1e-72 275.0 180 77.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.0e-71 272.7 181 79.6
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 3.5e-71 271.9 178 77.5
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.5e-71 271.9 178 74.2
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.5e-71 271.9 180 80.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 3.5e-71 271.9 178 79.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.6e-71 271.6 173 76.9
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.0e-71 271.2 178 75.8
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 6.0e-71 271.2 178 75.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 7.8e-71 270.8 188 75.0
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 7.8e-71 270.8 179 77.1
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.0e-70 270.4 175 76.6
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.0e-70 270.4 178 75.8
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.3e-70 269.2 180 75.6
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 3.9e-70 268.5 178 79.8
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 8.6e-70 267.3 175 80.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 8.6e-70 267.3 174 77.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.5e-69 265.8 177 76.8
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 3.3e-69 265.4 177 76.8
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 3.3e-69 265.4 177 76.8
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 3.3e-69 265.4 181 77.9
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 5.6e-69 264.6 175 77.1
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 5.6e-69 264.6 181 74.6
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.6e-69 264.6 174 77.0
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 7.3e-69 264.2 177 76.3
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 7.3e-69 264.2 177 76.3
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 9.5e-69 263.8 178 75.8
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.6e-68 263.1 178 74.2
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.6e-68 263.1 172 78.5
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.1e-68 262.7 174 76.4
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.1e-68 262.7 178 76.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.8e-68 262.3 180 74.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 6.2e-68 261.2 179 78.2
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.0e-68 260.8 178 78.1
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.1e-67 260.4 184 75.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.4e-67 260.0 186 74.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.8e-67 259.6 174 74.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 2.3e-67 259.2 174 76.4
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.1e-67 258.8 166 77.7
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.0e-67 258.5 174 75.3
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.0e-67 258.5 174 75.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.0e-67 258.5 180 73.9
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 5.2e-67 258.1 178 77.5
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.0e-66 256.1 174 73.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.6e-66 255.8 180 74.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 8.3e-65 250.8 174 74.7
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.3e-65 250.8 172 75.6
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.1e-64 250.4 174 74.7
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.4e-64 250.0 173 72.8
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.9e-64 249.6 175 70.9
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.2e-63 246.9 185 70.8
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.7e-63 245.7 175 72.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 6.0e-63 244.6 176 72.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.8e-63 244.2 175 71.4
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.0e-62 243.8 177 70.6
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.3e-62 242.7 175 72.6
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 8.6e-62 240.7 139 84.2
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 8.6e-62 240.7 175 73.1
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.1e-61 240.4 178 70.2
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.5e-61 240.0 181 69.6
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.5e-61 239.2 180 69.4
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 5.6e-61 238.0 179 72.1
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 5.6e-61 238.0 174 70.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 5.6e-61 238.0 169 75.1
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.1e-60 236.1 178 69.7
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 2.8e-60 235.7 173 70.5
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.8e-60 235.7 150 76.7
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.8e-59 233.0 181 68.0
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.3e-59 232.6 179 68.7
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.1e-59 232.3 179 70.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.0e-59 231.9 249 53.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 5.2e-59 231.5 143 79.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 5.2e-59 231.5 175 69.7
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.5e-58 229.9 177 70.6
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.6e-58 229.2 157 75.2
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 5.8e-58 228.0 172 69.2
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.5e-58 227.6 178 64.6
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 9.9e-58 227.3 179 67.0
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.3e-57 226.9 157 77.1
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 9.2e-56 220.7 191 65.4
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.0e-54 215.7 166 69.3
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.9e-53 213.0 173 66.5
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.1e-52 209.5 121 81.0
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.2e-49 199.5 180 65.6
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.6e-47 193.4 179 58.7
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.5e-47 192.2 171 57.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 7.8e-47 191.0 195 60.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.5e-45 186.8 197 57.4
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.3e-45 185.3 143 61.5
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 4.7e-44 181.8 180 54.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 8.1e-44 181.0 146 61.0
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.0e-38 162.5 89 84.3
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.5e-37 160.2 116 70.7
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 4.3e-37 158.7 181 50.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.2e-36 154.8 86 83.7
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.8e-35 153.3 174 51.7
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.2e-34 150.6 86 80.2
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 3.8e-33 145.6 89 79.8
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 6.4e-33 144.8 130 58.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 3.0e-30 136.0 112 62.5
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.0e-30 136.0 131 58.0
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.5e-29 132.9 124 60.5
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 5.5e-24 115.2 128 48.4
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 6.0e-23 111.7 86 67.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 1.8e-22 110.2 86 69.8
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 1.8e-22 110.2 86 69.8
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.3e-22 109.8 86 67.4
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 3.9e-22 109.0 125 44.0
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.8e-19 100.1 105 42.9
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.4e-19 99.8 149 39.6
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.3e-14 84.0 46 80.4
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.6e-12 77.0 80 51.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 4.8e-12 75.5 65 60.0
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-11 74.3 202 35.6
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 4.1e-11 72.4 97 39.2
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.5e-10 70.5 85 47.1
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.6e-10 69.7 79 51.9
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 8.8e-06 54.7 107 35.5


User provided reference genes

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