Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0214100 Rhododendron simsii HOM05D004132 ORTHO05D018840 8.4e-99 363.6 175 100.0
Rhsim08G0147200 Rhododendron simsii HOM05D004132 ORTHO05D018840 1.1e-74 283.5 214 70.1
Rhsim02G0198900 Rhododendron simsii HOM05D004132 ORTHO05D018840 6.8e-56 221.1 215 59.5
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 8.3e-54 214.2 112 87.5
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 3.5e-52 208.8 111 85.6
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 5.0e-51 204.9 112 83.0
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 1.5e-50 203.4 112 82.1
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 9.4e-50 200.7 112 81.2
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 9.4e-50 200.7 112 81.2
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 2.7e-49 199.1 111 82.0
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 4.7e-49 198.4 112 80.4
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 4.7e-49 198.4 112 80.4
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 6.1e-49 198.0 112 80.4
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 6.1e-49 198.0 112 80.4
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 6.1e-49 198.0 112 80.4
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 1.4e-48 196.8 111 80.2
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 2.3e-48 196.1 112 78.6
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 3.0e-48 195.7 112 81.2
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 3.0e-48 195.7 112 78.6
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 4.0e-48 195.3 112 79.5
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 5.2e-48 194.9 112 78.6
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 6.8e-48 194.5 112 77.7
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 6.8e-48 194.5 112 79.5
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 6.8e-48 194.5 128 71.1
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 6.8e-48 194.5 112 78.6
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 6.8e-48 194.5 112 78.6
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 8.8e-48 194.1 112 79.5
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 8.8e-48 194.1 112 78.6
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 8.8e-48 194.1 112 79.5
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 1.2e-47 193.7 112 78.6
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 1.2e-47 193.7 112 79.5
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 1.5e-47 193.4 134 70.1
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 1.5e-47 193.4 112 77.7
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 1.5e-47 193.4 112 78.6
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 2.0e-47 193.0 112 78.6
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 2.0e-47 193.0 112 78.6
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 2.0e-47 193.0 134 69.4
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 2.0e-47 193.0 112 78.6
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 2.6e-47 192.6 112 78.6
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 2.6e-47 192.6 112 77.7
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 2.6e-47 192.6 112 77.7
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 3.4e-47 192.2 128 70.3
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 4.4e-47 191.8 134 68.7
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 4.4e-47 191.8 112 77.7
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 5.7e-47 191.4 134 68.7
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 5.7e-47 191.4 112 77.7
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 5.7e-47 191.4 111 79.3
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 7.5e-47 191.0 112 77.7
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 7.5e-47 191.0 112 78.6
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 7.5e-47 191.0 112 78.6
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 7.5e-47 191.0 112 79.5
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 7.5e-47 191.0 112 78.6
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 9.8e-47 190.7 110 80.0
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 9.8e-47 190.7 112 76.8
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 9.8e-47 190.7 111 78.4
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 9.8e-47 190.7 112 78.6
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 9.8e-47 190.7 112 78.6
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 1.3e-46 190.3 134 68.7
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 1.3e-46 190.3 111 79.3
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 1.3e-46 190.3 111 79.3
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.3e-46 190.3 112 77.7
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 1.7e-46 189.9 112 77.7
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 1.7e-46 189.9 112 78.6
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.7e-46 189.9 112 78.6
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 2.2e-46 189.5 112 78.6
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 2.2e-46 189.5 111 76.6
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 2.2e-46 189.5 112 78.6
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 2.2e-46 189.5 111 79.3
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 2.2e-46 189.5 112 76.8
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 2.2e-46 189.5 111 79.3
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 2.8e-46 189.1 126 71.4
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 2.8e-46 189.1 126 72.2
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 2.8e-46 189.1 112 76.8
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 2.8e-46 189.1 112 77.7
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.8e-46 189.1 112 76.8
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 3.7e-46 188.7 111 78.4
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 3.7e-46 188.7 112 76.8
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 4.9e-46 188.3 134 67.9
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 6.3e-46 188.0 112 77.7
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 8.3e-46 187.6 111 75.7
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 8.3e-46 187.6 112 77.7
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 8.3e-46 187.6 112 77.7
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 8.3e-46 187.6 112 76.8
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 1.1e-45 187.2 112 77.7
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 1.1e-45 187.2 112 77.7
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 1.1e-45 187.2 112 77.7
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 1.1e-45 187.2 112 77.7
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 1.1e-45 187.2 112 75.0
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 1.4e-45 186.8 112 76.8
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 1.8e-45 186.4 134 67.2
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 1.8e-45 186.4 134 67.2
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 1.8e-45 186.4 134 67.2
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 1.8e-45 186.4 112 76.8
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 1.8e-45 186.4 112 75.9
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 1.8e-45 186.4 112 76.8
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 2.4e-45 186.0 134 65.7
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 2.4e-45 186.0 112 76.8
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 3.1e-45 185.7 134 67.2
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 3.1e-45 185.7 112 75.9
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 3.1e-45 185.7 134 67.2
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 3.1e-45 185.7 111 77.5
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 4.1e-45 185.3 111 74.8
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 4.1e-45 185.3 112 74.1
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 4.1e-45 185.3 112 74.1
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 4.1e-45 185.3 111 75.7
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 5.4e-45 184.9 112 75.0
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 7.0e-45 184.5 134 67.2
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 7.0e-45 184.5 112 75.9
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 1.6e-44 183.3 151 62.9
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 2.0e-44 183.0 111 74.8
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 2.7e-44 182.6 152 61.8
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 3.5e-44 182.2 132 66.7
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 3.5e-44 182.2 112 74.1
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 3.5e-44 182.2 112 73.2
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 4.5e-44 181.8 112 74.1
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 4.5e-44 181.8 152 61.8
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 1.0e-43 180.6 112 72.3
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 2.3e-43 179.5 112 75.0
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 5.0e-43 178.3 112 72.3
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 8.6e-43 177.6 103 78.6
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 1.1e-42 177.2 128 64.8
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 1.1e-42 177.2 128 66.4
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 9.5e-42 174.1 105 73.3
Hma1.2p1_0634F.1_g192870 Hydrangea macrophylla HOM05D004132 ORTHO05D018840 1.2e-41 173.7 111 71.2
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 3.6e-41 172.2 111 69.4
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 4.7e-41 171.8 128 61.7
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 1.4e-40 170.2 129 62.8
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 1.8e-40 169.9 111 68.5
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 6.8e-40 167.9 99 75.8
Rhsim06G0102600 Rhododendron simsii HOM05D004132 ORTHO05D018840 6.8e-40 167.9 114 77.2
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 8.9e-40 167.5 106 70.8
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 1.2e-39 167.2 102 74.5
Oeu050047.1 Olea europaea HOM05D004132 ORTHO05D018840 3.4e-39 165.6 108 72.2
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 3.7e-38 162.2 112 65.2
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 8.3e-38 161.0 111 65.8
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 8.3e-30 134.4 111 59.5
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 1.1e-29 134.0 71 84.5
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 2.0e-28 129.8 69 82.6
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.1e-25 119.8 75 72.0
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 2.3e-24 116.3 112 51.8
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 3.3e-18 95.9 77 55.8
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 1.1e-16 90.9 56 69.6
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 2.6e-15 86.3 74 54.1
Hma1.2p1_0666F.1_g199485 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 6.4e-14 81.6 43 79.1
GSVIVG01012128001 Vitis vinifera HOM05D004132 ORTHO05D006273 8.6e-11 71.2 108 43.5
HanXRQChr09g0260411 Helianthus annuus HOM05D004132 ORTHO05D006273 8.9e-08 61.2 44 59.1
Rhsim07G0156000 Rhododendron simsii HOM05D004132 ORTHO05D340189 1.7e-06 57.0 36 80.6


User provided reference genes

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