Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.3e-227 792.7 417 100.0
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.3e-203 713.0 417 90.6
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.8e-171 604.4 423 78.0
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.7e-169 599.7 439 74.7
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.7e-169 598.6 439 74.5
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.2e-162 577.0 495 65.5
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 7.5e-162 574.3 454 68.7
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.8e-161 572.4 435 70.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.1e-160 570.5 435 71.0
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-160 570.5 435 71.0
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.4e-160 569.3 444 70.3
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.4e-160 568.2 435 70.8
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.0e-159 566.2 435 71.0
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 5.9e-159 564.7 427 70.7
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.7e-158 563.1 441 68.7
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.3e-158 562.8 435 70.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.0e-158 561.6 435 69.9
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 3.0e-155 552.4 448 69.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.8e-154 547.4 420 69.0
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.7e-153 546.6 470 64.0
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.9e-153 545.0 440 68.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 5.4e-152 541.6 437 66.1
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 9.2e-152 540.8 439 68.6
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.6e-151 540.0 440 67.5
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.0e-151 539.7 441 67.3
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 4.6e-151 538.5 445 67.6
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 5.0e-150 535.0 440 66.4
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 2.5e-149 532.7 436 66.5
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.3e-149 532.3 436 67.2
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 3.3e-149 532.3 440 66.1
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.6e-148 530.0 441 66.2
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.0e-147 527.3 447 65.8
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.4e-147 526.9 425 68.2
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.8e-147 526.6 437 65.7
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.5e-146 523.5 437 65.9
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.4e-146 522.3 434 65.9
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.8e-146 521.5 441 65.8
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 5.8e-146 521.5 437 65.0
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 9.8e-146 520.8 447 65.3
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.7e-145 520.0 420 71.4
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.7e-145 520.0 425 66.6
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.9e-145 519.2 457 64.6
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.9e-145 519.2 442 65.4
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.7e-145 518.8 425 68.7
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 8.3e-145 517.7 447 64.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.1e-144 517.3 443 64.8
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.4e-144 516.2 451 65.0
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 4.1e-144 515.4 447 64.9
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 7.0e-144 514.6 477 61.2
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.2e-143 513.8 435 63.2
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 2.0e-143 513.1 443 65.2
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 3.5e-143 512.3 445 64.7
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.7e-142 510.0 447 64.4
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.9e-142 508.8 452 64.2
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 5.0e-142 508.4 440 64.8
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.1e-141 507.3 452 62.2
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.1e-141 507.3 444 64.4
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.1e-141 507.3 441 63.7
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.5e-141 506.9 440 63.2
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.3e-141 505.8 448 61.6
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 4.3e-141 505.4 443 63.4
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.3e-141 504.6 437 65.2
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 2.1e-140 503.1 452 61.9
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.1e-140 503.1 437 64.8
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 6.2e-140 501.5 420 64.5
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.1e-139 500.7 441 63.3
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 3.1e-139 499.2 436 66.1
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.2e-139 498.4 437 63.2
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.2e-139 498.4 437 63.2
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 6.8e-139 498.0 457 62.4
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 2.0e-138 496.5 432 63.9
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.0e-138 496.5 449 61.2
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 2.0e-138 496.5 443 63.9
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.4e-138 495.4 429 64.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.1e-136 490.7 431 66.1
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.1e-136 490.7 440 63.0
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.2e-136 489.2 427 63.2
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 3.2e-136 489.2 429 64.6
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 5.4e-136 488.4 437 64.3
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.1e-135 486.5 455 62.0
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.7e-135 486.1 446 63.2
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.9e-133 479.9 443 61.6
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 2.5e-133 479.6 496 57.5
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.2e-132 477.2 469 58.0
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.2e-132 477.2 448 61.6
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.8e-132 476.1 450 61.3
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.2e-130 470.7 429 63.4
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 5.8e-130 468.4 442 62.2
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-129 467.2 457 60.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.7e-129 466.8 458 60.0
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.2e-129 466.5 435 62.5
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 8.4e-129 464.5 451 60.3
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 7.1e-128 461.5 451 60.1
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.5e-127 459.1 424 64.2
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 3.0e-126 456.1 437 59.5
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.9e-125 453.4 432 60.6
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 3.3e-125 452.6 456 59.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.8e-124 449.5 442 57.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.4e-123 447.2 458 56.8
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 5.8e-122 441.8 444 59.9
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.3e-121 440.7 443 60.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.1e-117 427.6 428 58.6
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.3e-116 424.1 442 60.4
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 6.9e-115 418.3 424 59.0
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.2e-113 413.3 440 53.4
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.9e-113 412.9 438 56.4
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.5e-109 400.6 440 56.8
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 5.3e-107 392.1 437 55.8
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 9.0e-107 391.3 288 70.1
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.0e-106 390.2 381 57.0
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.9e-105 386.3 380 59.5
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 2.7e-103 379.8 373 60.1
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.5e-103 379.4 476 48.7
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 8.7e-102 374.8 435 53.3
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.5e-101 373.2 433 53.1
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.2e-97 360.1 419 53.7
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 3.7e-92 342.8 304 63.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.2e-90 337.8 367 56.9
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.5e-89 332.0 434 48.8
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 8.5e-89 331.6 474 49.4
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.3e-86 324.3 299 62.5
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.6e-84 317.4 513 42.9
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 3.3e-77 293.1 317 55.8
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.8e-67 260.8 169 77.5
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.5e-66 256.1 438 43.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.1e-64 251.5 439 43.7
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 4.8e-60 236.1 214 61.7
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 5.0e-57 226.1 262 49.6
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 5.0e-57 226.1 262 49.6
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.2e-55 221.5 352 47.4
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.0e-54 218.4 137 76.6
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.8e-52 210.3 329 44.4
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.2e-45 188.3 175 61.1
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.0e-41 172.9 315 42.9
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.7e-33 147.9 91 84.6
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.3e-33 147.5 117 64.1
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.5e-32 144.1 83 84.3
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.2e-31 141.7 427 29.3
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 2.8e-31 140.6 74 87.8
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.2e-31 139.4 259 42.1
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.8e-30 137.9 142 52.8
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.8e-30 137.9 142 52.8
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 8.9e-30 135.6 181 48.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.3e-28 131.7 69 87.0
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 3.5e-26 123.6 68 82.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.7e-25 121.3 119 57.1
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.5e-24 118.2 92 67.4
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.9e-20 103.2 137 49.6
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 4.3e-16 90.1 520 24.2
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 5.8e-13 79.7 62 67.7
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 8.4e-12 75.9 91 52.7
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 2.1e-07 61.2 122 38.5
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 6.2e-07 59.7 69 55.1
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 6.9e-06 56.2 87 39.1
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 6.9e-06 56.2 59 45.8


User provided reference genes

Program Settings