Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 4.1e-237 824.3 409 100.0
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.4e-183 645.2 361 90.6
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 4.4e-183 644.8 350 93.4
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 2.2e-182 642.5 352 92.3
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 3.7e-182 641.7 347 93.9
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.4e-181 639.8 347 93.7
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 9.2e-181 637.1 350 93.1
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 1.2e-177 626.7 349 90.8
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-176 623.2 355 89.0
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 2.4e-176 622.5 347 90.5
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 9.9e-167 590.5 349 87.7
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 9.9e-167 590.5 349 87.7
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 9.9e-167 590.5 349 87.7
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 1.3e-166 590.1 346 88.7
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 1.7e-166 589.7 349 87.4
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.9e-166 589.0 352 86.6
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.9e-166 589.0 352 86.6
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 7.8e-164 580.9 350 86.6
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 8.1e-161 570.9 352 83.8
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 1.9e-149 533.1 374 77.0
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.0e-148 528.1 310 85.5
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.0e-147 525.8 277 93.5
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.0e-147 525.8 277 93.5
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 4.8e-145 518.5 327 82.0
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 4.8e-145 518.5 327 82.0
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 1.6e-137 493.4 280 89.3
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 4.5e-135 485.3 277 86.3
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 9.4e-133 477.6 256 93.4
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 7.4e-130 468.0 309 79.6
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 3.8e-126 455.7 253 89.3
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.9e-117 426.8 289 76.1
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 2.0e-114 416.8 237 89.0
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 5.0e-110 402.1 217 93.1
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 2.5e-109 399.8 340 67.1
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 9.4e-109 397.9 226 88.5
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 2.1e-108 396.7 250 80.8
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 1.2e-106 391.0 255 78.8
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 2.8e-105 386.3 208 90.9
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 4.1e-104 382.5 226 86.7
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 4.5e-103 379.0 244 82.4
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 9.4e-101 371.3 361 60.9
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 1.3e-94 350.9 204 87.3
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 2.5e-93 346.7 214 82.7
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 3.3e-93 346.3 200 87.5
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 7.5e-90 335.1 192 89.1
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 5.6e-85 318.9 200 81.0
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 5.6e-85 318.9 200 81.0
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 5.6e-85 318.9 200 81.0
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 2.2e-73 280.4 215 67.9
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 4.1e-72 276.2 146 93.8
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 5.6e-69 265.8 148 87.8
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 4.4e-66 256.1 198 70.2
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 1.3e-65 254.6 163 79.1
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.1e-64 248.8 201 66.7
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.1e-60 237.3 139 84.2
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 3.1e-59 233.4 252 54.0
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 3.1e-59 233.4 174 71.3
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 4.0e-59 233.0 252 53.6
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 1.7e-57 227.6 263 54.4
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.8e-57 226.5 134 83.6
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.7e-55 220.3 134 82.8
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.3e-52 211.5 149 74.5
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 6.2e-52 209.1 152 71.7
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 6.2e-52 209.1 152 71.7
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 6.2e-52 209.1 152 71.7
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 6.2e-52 209.1 152 71.7
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 8.1e-52 208.8 134 79.1
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 2.4e-51 207.2 173 64.2
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 9.9e-50 201.8 147 75.5
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.9e-47 192.2 134 73.1
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-42 177.6 127 70.9
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 7.1e-40 169.1 88 92.0
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 1.2e-39 168.3 100 85.0
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 4.6e-39 166.4 91 87.9
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.6e-37 158.7 137 61.3
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 3.1e-35 153.7 136 65.4
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 1.1e-32 145.2 110 66.4
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 9.3e-32 142.1 98 70.4
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.6e-31 139.8 91 78.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.5e-29 134.8 108 66.7
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 2.5e-29 134.0 80 83.8
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.7e-29 132.9 183 45.4
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 1.4e-24 118.2 83 77.1
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.3e-22 110.9 98 63.3
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.5e-21 108.2 62 82.3
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-19 101.7 63 81.0
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 1.8e-19 101.3 58 84.5
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.7e-17 94.7 62 87.1
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 3.8e-17 93.6 50 90.0
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 5.0e-17 93.2 95 53.7
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 1.1e-16 92.0 122 43.4
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-15 88.6 63 68.3
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 1.1e-13 82.0 50 76.0
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 3.4e-10 70.5 36 88.9
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 8.5e-09 65.9 37 86.5
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.2e-08 63.5 42 73.8
CSS0018598 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 3.6e-07 60.5 47 63.8


User provided reference genes

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