Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.1e-220 768.5 481 100.0
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.4e-198 694.9 483 87.6
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.6e-195 686.4 492 86.6
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.6e-192 676.4 492 85.8
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.6e-190 669.1 491 83.5
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.5e-187 658.3 492 84.3
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.2e-168 597.0 492 70.9
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.2e-160 570.5 491 68.6
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.6e-158 562.8 488 71.3
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 4.0e-143 512.3 476 63.0
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 8.4e-141 504.6 502 61.6
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.2e-139 500.7 477 65.8
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 2.6e-134 483.0 482 67.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.9e-133 478.8 480 64.4
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 4.9e-133 478.8 492 66.5
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 6.5e-133 478.4 477 66.7
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.0e-130 471.1 494 59.9
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.8e-130 470.3 485 60.6
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 3.9e-130 469.2 509 54.6
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 5.1e-130 468.8 500 57.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.7e-130 468.0 494 61.9
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 3.3e-129 466.1 496 58.3
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.3e-129 466.1 500 56.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.1e-128 463.4 480 66.7
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.2e-128 461.5 489 59.1
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.8e-127 460.3 500 57.2
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.4e-127 459.9 479 62.0
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 6.9e-127 458.4 482 57.7
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.2e-126 457.6 503 63.0
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 8.4e-125 451.4 486 64.2
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 3.2e-124 449.5 480 66.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 9.3e-124 448.0 488 54.7
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.9e-123 444.9 475 59.8
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.0e-122 444.5 484 57.0
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 5.1e-122 442.2 504 62.3
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 6.7e-122 441.8 512 61.3
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.7e-122 441.4 494 56.3
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.9e-121 440.3 477 57.0
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.5e-121 439.9 484 55.6
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.6e-120 437.2 488 59.4
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.1e-119 434.5 517 56.5
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.4e-119 434.1 478 59.4
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.8e-119 433.7 490 56.9
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-119 433.7 483 58.0
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.4e-119 433.3 535 54.6
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 5.3e-119 432.2 484 58.3
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 3.4e-118 429.5 477 62.1
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.7e-117 427.2 521 54.9
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 4.2e-116 422.5 487 58.3
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 5.5e-116 422.2 488 64.8
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.6e-115 420.6 480 59.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.7e-115 419.9 477 58.5
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 3.6e-115 419.5 478 56.3
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.6e-115 419.1 478 58.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.6e-115 419.1 475 56.4
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.0e-114 417.9 479 57.8
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.8e-114 417.2 480 54.8
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.3e-114 416.8 479 54.7
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 5.1e-114 415.6 477 53.5
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.0e-113 413.7 479 57.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 7.4e-113 411.8 505 64.0
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 9.7e-113 411.4 481 53.2
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.3e-112 411.0 491 53.8
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.8e-112 409.8 487 52.4
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 3.7e-112 409.5 500 54.0
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.1e-111 407.9 502 57.0
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 3.1e-111 406.4 485 60.8
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.5e-110 402.5 486 56.6
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 4.5e-110 402.5 490 65.1
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 7.7e-110 401.7 488 54.9
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 7.7e-110 401.7 477 62.5
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 5.0e-109 399.1 501 56.7
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 9.4e-108 394.8 498 56.6
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.0e-106 391.3 490 52.4
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.4e-106 391.0 499 52.3
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.0e-105 387.1 502 52.8
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 3.3e-105 386.3 478 57.5
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 5.7e-105 385.6 482 56.0
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 7.4e-105 385.2 458 57.4
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 3.7e-104 382.9 481 51.6
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 4.1e-103 379.4 494 51.0
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 4.1e-103 379.4 485 57.5
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 9.1e-103 378.3 503 49.9
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 9.1e-103 378.3 505 56.8
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 5.9e-102 375.6 500 50.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.7e-101 374.0 484 49.4
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 5.0e-101 372.5 507 49.7
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.9e-100 370.5 479 50.7
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 4.2e-100 369.4 477 52.8
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 9.4e-100 368.2 484 52.9
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.2e-99 367.9 500 52.0
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.4e-98 364.4 493 50.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.0e-97 360.5 444 53.2
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.7e-96 356.3 501 56.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 8.2e-96 355.1 489 49.1
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 9.1e-95 351.7 498 53.0
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.0e-94 350.5 489 48.9
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.0e-94 350.5 446 53.4
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.6e-94 350.1 463 55.9
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 8.8e-90 335.1 514 45.9
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 8.8e-90 335.1 197 85.3
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.2e-89 334.7 466 50.4
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.8e-88 330.1 485 59.6
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.1e-87 326.2 477 55.1
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 5.4e-87 325.9 499 45.9
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 9.4e-84 315.1 478 45.2
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.5e-81 307.8 463 53.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.7e-80 304.3 481 43.2
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 3.5e-78 296.6 171 86.0
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 2.9e-77 293.5 517 43.7
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.6e-75 287.7 192 77.6
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.7e-75 286.2 530 39.1
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.4e-74 284.6 444 43.7
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 6.8e-74 282.3 168 84.5
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.7e-70 270.4 476 45.0
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 4.6e-70 269.6 470 41.5
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 5.0e-69 266.2 418 48.3
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.5e-68 263.8 420 45.5
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 6.2e-67 259.2 492 40.9
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 3.5e-62 243.4 384 48.2
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.3e-58 230.7 423 44.9
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 8.3e-56 222.2 128 82.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.1e-52 211.8 171 68.4
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.0e-49 201.1 210 58.1
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 4.1e-47 193.4 526 34.0
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.4e-42 178.3 446 34.5
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 4.6e-38 163.3 474 34.2
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 8.7e-37 159.1 158 52.5
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 9.9e-33 145.6 191 45.0
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.4e-31 141.7 444 31.5
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 7.1e-31 139.4 147 47.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.0e-25 121.3 73 83.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 2.0e-25 121.3 65 90.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.4e-25 120.6 97 68.0
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 8.4e-24 115.9 172 49.4
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 5.6e-20 103.2 97 58.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 2.5e-15 87.8 62 72.6
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 2.5e-15 87.8 62 72.6
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.2e-15 87.4 114 50.9
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 3.5e-14 84.0 205 33.2
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-12 79.0 102 45.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-12 79.0 102 45.1
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 9.6e-12 75.9 49 75.5
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.6e-11 75.1 50 70.0
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 6.9e-10 69.7 93 45.2
Sp3g23340 Schrenkiella parvula HOM05D000230 ORTHO05D000176 7.9e-06 56.2 136 26.5


User provided reference genes

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