Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240991 Rosa chinensis HOM05D002984 ORTHO05D003561 9.6e-25 115.9 55 100.0
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 2.1e-16 88.2 44 95.5
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 2.8e-16 87.8 43 97.7
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.8e-16 87.8 43 97.7
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 2.8e-16 87.8 43 97.7
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 2.8e-16 87.8 43 97.7
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Dinv04490 Davidia involucrata HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Lj6A762T42 Lonicera japonica HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Lj6C764G13 Lonicera japonica HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 6.2e-16 86.7 43 95.3
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 6.2e-16 86.7 45 91.1
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 6.2e-16 86.7 43 95.3
ClCG05G022960 Citrullus lanatus HOM05D002984 ORTHO05D000550 8.2e-16 86.3 43 93.0
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 1.4e-15 85.5 43 93.0
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 1.4e-15 85.5 43 93.0
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 1.4e-15 85.5 43 93.0
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 1.4e-15 85.5 43 93.0
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 1.4e-15 85.5 43 93.0
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.4e-15 85.5 43 93.0
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 2.4e-15 84.7 43 93.0
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 2.4e-15 84.7 43 93.0
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 2.4e-15 84.7 43 93.0
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Glyma.01G086201 Glycine max HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 90.7
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 3.1e-15 84.3 43 93.0
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
BcaB03g12090 Brassica carinata HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 5.3e-15 83.6 43 90.7
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 6.9e-15 83.2 45 88.9
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 6.9e-15 83.2 43 90.7
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 6.9e-15 83.2 43 90.7
MBI15_g33904_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 9.0e-15 82.8 43 90.7
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 9.0e-15 82.8 43 88.4
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 2.0e-14 81.6 43 90.7
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 2.0e-14 81.6 43 88.4
Psat7g129560 Pisum sativum HOM05D002984 ORTHO05D003561 2.0e-14 81.6 43 90.7
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 2.6e-14 81.3 43 86.0
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 4.5e-14 80.5 42 88.1
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 4.5e-14 80.5 43 90.7
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 5.8e-14 80.1 43 86.0
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 5.8e-14 80.1 43 88.4
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 1.0e-13 79.3 43 88.4
PSO017G3087 Papaver somniferum HOM05D002984 ORTHO05D003561 3.8e-13 77.4 43 86.0
CSS0024955 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 6.5e-13 76.6 43 90.7
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 1.1e-12 75.9 43 81.4
Medtr5g054690 Medicago truncatula HOM05D002984 ORTHO05D003561 3.2e-12 74.3 43 81.4
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 4.2e-12 73.9 43 81.4
CDE08G0495 Ceratophyllum demersum HOM05D002984 ORTHO05D003561 3.5e-11 70.9 43 74.4
Zm00001eb115900 Zea mays HOM05D000554 ORTHO05D000860 3.5e-11 70.9 47 72.3
SEGI_39906 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 6.7e-10 66.6 48 62.5
VMungo0464G0516 Vigna mungo HOM05D002984 ORTHO05D003561 1.1e-09 65.9 39 76.9
SEGI_05160 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 3.3e-09 64.3 43 65.1
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 3.3e-09 64.3 43 65.1
FAN13G3281 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.3e-08 62.4 49 63.3
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 1.3e-08 62.4 43 65.1
HanXRQChr17g0552251 Helianthus annuus HOM05D002984 ORTHO05D003561 1.6e-08 62.0 41 65.9
Lj2g0014050 Lotus japonicus HOM05D002984 ORTHO05D003561 2.2e-08 61.6 49 59.2
FvH4_5g01900 Fragaria vesca HOM05D002984 ORTHO05D003561 2.8e-08 61.2 43 65.1
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 8.2e-08 59.7 43 62.8
RcHm_v2.0_Chr5g0075601 Rosa chinensis HOM05D002984 ORTHO05D003561 8.2e-08 59.7 82 45.1
FAN25G0819 Fragaria x ananassa HOM05D002984 ORTHO05D009683 1.8e-07 58.5 28 96.4
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 5.3e-07 57.0 30 86.7
Nitab4.5_0000672g0090 Nicotiana tabacum HOM05D002984 ORTHO05D003561 9.0e-07 56.2 60 46.7
CSS0008826 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.5e-06 55.5 31 80.6
AUR62002298 Chenopodium quinoa HOM05D002984 ORTHO05D003561 1.5e-06 55.5 29 86.2


User provided reference genes

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