Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240561 Rosa chinensis HOM05D002692 ORTHO05D002971 5.6e-81 304.3 162 100.0
RcHm_v2.0_Chr7g0240521 Rosa chinensis HOM05D002692 ORTHO05D002971 1.8e-63 246.1 166 83.7
FvH4_5g38490 Fragaria vesca HOM05D002692 ORTHO05D002971 1.9e-57 226.1 168 75.6
FAN18G3230 Fragaria x ananassa HOM05D002692 ORTHO05D002971 6.9e-55 217.6 166 74.7
FAN04G3156 Fragaria x ananassa HOM05D002692 ORTHO05D002971 1.3e-53 213.4 168 73.8
FAN13G3221 Fragaria x ananassa HOM05D002692 ORTHO05D002971 1.4e-52 209.9 166 74.7
Prupe.1G507100 Prunus persica HOM05D002692 ORTHO05D002971 3.6e-43 178.7 181 60.2
MD00G1103800 Malus domestica HOM05D002692 ORTHO05D002971 2.5e-36 156.0 183 53.0
MD15G1359500 Malus domestica HOM05D002692 ORTHO05D002971 2.1e-35 152.9 190 51.6
QL12p035427 Quercus lobata HOM05D002692 ORTHO05D002971 2.5e-28 129.4 167 51.5
TAR293G0002 Trochodendron aralioides HOM05D002692 ORTHO05D002971 2.7e-22 109.4 163 47.2
CiPaw.05G230100 Carya illinoinensis HOM05D002692 ORTHO05D002971 3.5e-22 109.0 172 44.8
GSVIVG01008951001 Vitis vinifera HOM05D002692 ORTHO05D002971 4.5e-22 108.6 161 44.7
Cfa015950 Carpinus fangiana HOM05D002692 ORTHO05D002971 1.3e-21 107.1 137 48.2
Dinv26728 Davidia involucrata HOM05D002692 ORTHO05D002971 1.3e-21 107.1 141 46.8
TWI36G0527 Tripterygium wilfordii HOM05D002692 ORTHO05D002971 3.8e-21 105.5 147 46.9
Potri.002G090000 Populus trichocarpa HOM05D002692 ORTHO05D002971 5.0e-21 105.1 175 43.4
Sed0015738 Sechium edule HOM05D002692 ORTHO05D002971 8.5e-21 104.4 163 46.0
Manes.02G158100 Manihot esculenta HOM05D002692 ORTHO05D002971 1.9e-20 103.2 172 40.1
Cpa.g.sc49.121 Carica papaya HOM05D002692 ORTHO05D002971 3.2e-20 102.4 127 44.9
Manes.18G072300 Manihot esculenta HOM05D002692 ORTHO05D002971 9.4e-20 100.9 171 40.9
Hma1.2p1_0251F.1_g102600 Hydrangea macrophylla HOM05D002692 ORTHO05D002971 8.0e-19 97.8 175 38.9
Sabra02G0070900 Salix brachista HOM05D002692 ORTHO05D002971 1.8e-18 96.7 166 39.8
Atru.chr13.1306 Acer truncatum HOM05D002692 ORTHO05D002971 2.3e-18 96.3 84 57.1
Haze_00538 Corylus avellana HOM05D002692 ORTHO05D002971 2.3e-18 96.3 84 60.7
Duzib093G0586 Durio zibethinus HOM05D002692 ORTHO05D002971 3.0e-18 95.9 133 45.1
MBI16_g07655_MAGBIO Magnolia biondii HOM05D002692 ORTHO05D002971 8.8e-18 94.4 118 45.8
Ciclev10001980m.g Citrus clementina HOM05D002692 ORTHO05D002971 1.2e-17 94.0 163 41.1
CSS0030574 Camellia sinensis var. sinensis HOM05D002692 ORTHO05D002971 1.5e-17 93.6 173 38.2
Dinv27391 Davidia involucrata HOM05D002692 ORTHO05D005280 5.7e-17 91.7 121 47.9
FvH4_5g38550 Fragaria vesca HOM05D015948 ORTHO05D022625 1.3e-16 90.5 80 72.5
Sc01g0001600 Simmondsia chinensis HOM05D002692 ORTHO05D002971 1.3e-16 90.5 164 40.2
Rhsim06G0110000 Rhododendron simsii HOM05D002692 ORTHO05D002971 1.7e-16 90.1 138 39.9
arahy.Tifrunner.gnm1.ann1.312JJI Arachis hypogaea HOM05D002692 ORTHO05D002971 2.2e-16 89.7 166 37.3
Potri.005G171201 Populus trichocarpa HOM05D002692 ORTHO05D002971 2.8e-16 89.4 161 40.4
Nn5g27937 Nelumbo nucifera HOM05D002692 ORTHO05D002971 8.3e-16 87.8 126 46.0
FvH4_5g38670 Fragaria vesca HOM05D015948 ORTHO05D022625 1.4e-15 87.0 82 67.1
DCAR_014787 Daucus carota HOM05D000021 ORTHO05D000010 2.4e-15 86.3 132 40.9
Gohir.D05G233700 Gossypium hirsutum HOM05D002692 ORTHO05D002971 2.4e-15 86.3 132 40.2
Gorai.009G241800 Gossypium raimondii HOM05D002692 ORTHO05D002971 4.1e-15 85.5 132 40.2
Lj1g0021040 Lotus japonicus HOM05D002692 ORTHO05D002971 4.1e-15 85.5 161 36.6
Nitab4.5_0000051g0240 Nicotiana tabacum HOM05D002692 ORTHO05D002971 4.1e-15 85.5 116 43.1
CsaV3_1G023030 Cucumis sativus L. HOM05D002692 ORTHO05D002971 5.4e-15 85.1 168 39.3
Nitab4.5_0004737g0070 Nicotiana tabacum HOM05D002692 ORTHO05D002971 5.4e-15 85.1 116 42.2
Thecc.08G115800 Theobroma cacao HOM05D002692 ORTHO05D002971 5.4e-15 85.1 132 40.2
Oeu001998.1 Olea europaea HOM05D002692 ORTHO05D002971 9.1e-15 84.3 119 44.5
Gohir.A05G231200 Gossypium hirsutum HOM05D002692 ORTHO05D002971 1.2e-14 84.0 132 40.2
arahy.Tifrunner.gnm1.ann1.AL94LI Arachis hypogaea HOM05D002692 ORTHO05D002971 1.6e-14 83.6 156 37.2
Ca_25766_v3 Cicer arietinum L. HOM05D002692 ORTHO05D002971 1.6e-14 83.6 136 39.7
vmacro12527 Vaccinium macrocarpon HOM05D002692 ORTHO05D002971 1.6e-14 83.6 75 54.7
Lalb_Chr11g0065631 Lupinus albus HOM05D002692 ORTHO05D002971 2.7e-14 82.8 154 37.0
Actinidia02583 Actinidia chinensis HOM05D002692 ORTHO05D002971 3.5e-14 82.4 84 53.6
PSO017G2310 Papaver somniferum HOM05D002692 ORTHO05D002971 1.0e-13 80.9 161 36.0
CANSAT25G1044 Cannabis sativa HOM05D002692 ORTHO05D002971 1.7e-13 80.1 140 42.9
ClCG08G010900 Citrullus lanatus HOM05D002692 ORTHO05D002971 2.2e-13 79.7 167 41.9
TPR.G32939 Trifolium pratense HOM05D002692 ORTHO05D002971 2.9e-13 79.3 81 50.6
FvH4_5g38590 Fragaria vesca HOM05D015948 ORTHO05D022625 5.0e-13 78.6 72 68.1
PGSC0003DMG400006539 Solanum tuberosum HOM05D002692 ORTHO05D002971 6.5e-13 78.2 116 39.7
Medtr3g073450 Medicago truncatula HOM05D002692 ORTHO05D002971 8.5e-13 77.8 133 38.3
HanXRQChr08g0229261 Helianthus annuus HOM05D002692 ORTHO05D002971 1.1e-12 77.4 137 37.2
COL.COLO4_16530 Corchorus olitorius HOM05D002692 ORTHO05D002971 4.2e-12 75.5 71 50.7
PSO170G1486 Papaver somniferum HOM05D002692 ORTHO05D002971 5.5e-12 75.1 167 34.1
Lsat_1_v5_gn_6_111081 Lactuca sativa HOM05D002692 ORTHO05D002971 1.6e-11 73.6 127 37.8
Glyma.06G108000 Glycine max HOM05D002692 ORTHO05D002971 2.1e-11 73.2 152 36.8
MELO3C011373.2 Cucumis melo HOM05D002692 ORTHO05D002971 2.7e-11 72.8 154 35.7
Aqoxy6G00149 Aquilegia oxysepala HOM05D002692 ORTHO05D002971 3.6e-11 72.4 102 42.2
Cc01_g05820 Coffea canephora HOM05D002692 ORTHO05D002971 3.6e-11 72.4 120 37.5
Lj4A576G35 Lonicera japonica HOM05D002692 ORTHO05D002971 3.6e-11 72.4 84 46.4
SGA_v2.0_scaffold25G11088 Striga asiatica HOM05D002692 ORTHO05D002971 6.1e-11 71.6 89 43.8
MSTRG.24143 Avicennia marina HOM05D002692 ORTHO05D002971 1.0e-10 70.9 157 34.4
Migut.N03330 Erythranthe guttata HOM05D002692 ORTHO05D002971 1.8e-10 70.1 147 36.1
Eucgr.F04384 Eucalyptus grandis HOM05D002692 ORTHO05D002971 5.2e-10 68.6 177 33.9
Solyc11g013390.3 Solanum lycopersicum HOM05D002692 ORTHO05D002971 5.2e-10 68.6 116 36.2
Phvul.009G026300 Phaseolus vulgaris HOM05D002692 ORTHO05D002971 8.8e-10 67.8 158 32.9
Sopen11g008400 Solanum pennellii HOM05D002692 ORTHO05D002971 8.8e-10 67.8 81 42.0
AL1G51030 Arabidopsis lyrata HOM05D002692 ORTHO05D002971 1.2e-09 67.4 146 36.3
ECA246G1914 Erigeron canadensis HOM05D002692 ORTHO05D002971 1.2e-09 67.4 139 35.3
CARHR035040 Cardamine hirsuta HOM05D002692 ORTHO05D002971 1.5e-09 67.0 153 35.3
unitig_578.g16297 Utricularia gibba HOM05D002692 ORTHO05D002971 1.5e-09 67.0 75 46.7
A08p07900 Brassica napus HOM05D002692 ORTHO05D002971 2.0e-09 66.6 115 39.1
BraA08t32810Z Brassica rapa HOM05D002692 ORTHO05D002971 2.0e-09 66.6 115 39.1
AUR62023600 Chenopodium quinoa HOM05D002692 ORTHO05D002971 2.6e-09 66.2 91 37.4
Sp1g31140 Schrenkiella parvula HOM05D002692 ORTHO05D002971 2.6e-09 66.2 162 37.7
VMungo1309G2912 Vigna mungo HOM05D002692 ORTHO05D002971 2.6e-09 66.2 163 35.6
Ah.16g109720 Amaranthus hybridus HOM05D002692 ORTHO05D002971 3.4e-09 65.9 88 39.8
BcaC07g37488 Brassica carinata HOM05D002692 ORTHO05D002971 4.4e-09 65.5 115 39.1
BolC8t47805H Brassica oleracea HOM05D002692 ORTHO05D002971 4.4e-09 65.5 115 39.1
Sc07g0007660 Simmondsia chinensis HOM05D002692 ORTHO05D002971 4.4e-09 65.5 96 37.5
Psat5g135800 Pisum sativum HOM05D002692 ORTHO05D002971 5.7e-09 65.1 157 35.0
AT1G36390 Arabidopsis thaliana HOM05D002692 ORTHO05D002971 7.5e-09 64.7 129 34.9
Carub.0001s3376 Capsella rubella HOM05D002692 ORTHO05D002971 7.5e-09 64.7 155 35.5
CAN.G993.38 Capsicum annuum HOM05D002692 ORTHO05D002971 7.5e-09 64.7 64 53.1
EL10Ac1g00047 Beta vulgaris HOM05D002692 ORTHO05D002971 1.3e-08 63.9 75 42.7
Thhalv10025813m.g Eutrema salsugineum HOM05D002692 ORTHO05D002971 1.3e-08 63.9 127 37.0
SalBow6G6452 Salvia bowleyana HOM05D002692 ORTHO05D002971 1.3e-08 63.9 174 31.0
RcHm_v2.0_Chr3g0495651 Rosa chinensis HOM05D002692 ORTHO05D002971 2.2e-08 63.2 79 36.7
Nitab4.5_0008337g0050 Nicotiana tabacum HOM05D002692 ORTHO05D002971 2.8e-08 62.8 89 37.1
Aa31LG6G9020 Aethionema arabicum HOM05D002692 ORTHO05D002971 3.7e-08 62.4 125 34.4
ATR0068G090 Amborella trichopoda HOM05D002692 ORTHO05D002971 3.7e-08 62.4 95 33.7
Pp3c4_3730 Physcomitrium patens HOM05D002692 ORTHO05D002971 3.7e-08 62.4 85 32.9
PGR142G3783 Punica granatum HOM05D002692 ORTHO05D002971 3.7e-08 62.4 94 36.2
HPP92_005741 Vanilla planifolia HOM05D002692 ORTHO05D002971 3.7e-08 62.4 72 44.4
ATR0584G063 Amborella trichopoda HOM05D002692 ORTHO05D002971 6.3e-08 61.6 87 36.8
AUR62004682 Chenopodium quinoa HOM05D002692 ORTHO05D002971 6.3e-08 61.6 75 41.3
Gohir.D11G237900 Gossypium hirsutum HOM05D002692 ORTHO05D002971 6.3e-08 61.6 97 34.0
Lalb_Chr22g0358391 Lupinus albus HOM05D002692 ORTHO05D002971 6.3e-08 61.6 91 36.3
Nitab4.5_0003690g0030 Nicotiana tabacum HOM05D002692 ORTHO05D002971 6.3e-08 61.6 102 32.4
Os02g0612000 Oryza sativa ssp. japonica HOM05D002692 ORTHO05D002971 6.3e-08 61.6 144 29.9
Pp3c12_24950 Physcomitrium patens HOM05D002692 ORTHO05D002971 6.3e-08 61.6 77 36.4
Gohir.A13G160200 Gossypium hirsutum HOM05D002692 ORTHO05D002971 8.3e-08 61.2 96 34.4
Hund16817 Selenicereus undatus HOM05D002692 ORTHO05D002971 8.3e-08 61.2 166 27.1
THA.LOC104827469 Tarenaya hassleriana HOM05D002692 ORTHO05D002971 8.3e-08 61.2 71 43.7
Zm00001eb184510 Zea mays HOM05D002692 ORTHO05D002971 1.1e-07 60.8 86 32.6
Gohir.D13G165400 Gossypium hirsutum HOM05D002692 ORTHO05D002971 1.4e-07 60.5 96 34.4
Gorai.013G197200 Gossypium raimondii HOM05D002692 ORTHO05D002971 1.4e-07 60.5 96 34.4
Atru.chr2.1576 Acer truncatum HOM05D002692 ORTHO05D002971 1.8e-07 60.1 86 37.2
Glyma.03G005900 Glycine max HOM05D002692 ORTHO05D002971 1.8e-07 60.1 91 33.0
Nitab4.5_0000062g0450 Nicotiana tabacum HOM05D002692 ORTHO05D002971 1.8e-07 60.1 89 36.0
Gorai.007G251400 Gossypium raimondii HOM05D002692 ORTHO05D002971 2.4e-07 59.7 96 33.3
arahy.Tifrunner.gnm1.ann1.H5J3RW Arachis hypogaea HOM05D002692 ORTHO05D002971 3.1e-07 59.3 96 32.3
CDE08G1637 Ceratophyllum demersum HOM05D002692 ORTHO05D002971 3.1e-07 59.3 78 38.5
Gohir.A11G224204 Gossypium hirsutum HOM05D002692 ORTHO05D002971 3.1e-07 59.3 86 33.7
QL07p016316 Quercus lobata HOM05D002692 ORTHO05D002971 3.1e-07 59.3 83 34.9
QL07p016392 Quercus lobata HOM05D002692 ORTHO05D002971 3.1e-07 59.3 83 34.9
PGSC0003DMG400028115 Solanum tuberosum HOM05D002692 ORTHO05D002971 3.1e-07 59.3 95 32.6
arahy.Tifrunner.gnm1.ann1.BQ5T6G Arachis hypogaea HOM05D002692 ORTHO05D002971 4.1e-07 58.9 96 32.3
arahy.Tifrunner.gnm1.ann1.PPJ6CE Arachis hypogaea HOM05D002692 ORTHO05D002971 4.1e-07 58.9 96 32.3
AUR62036503 Chenopodium quinoa HOM05D002692 ORTHO05D002971 4.1e-07 58.9 75 38.7
Glyma.19G120100 Glycine max HOM05D002692 ORTHO05D002971 4.1e-07 58.9 91 31.9
Nn2g14731 Nelumbo nucifera HOM05D002692 ORTHO05D002971 4.1e-07 58.9 82 35.4
GSVIVG01029905001 Vitis vinifera HOM05D002692 ORTHO05D002971 4.1e-07 58.9 82 35.4
arahy.Tifrunner.gnm1.ann1.Y3SKWA Arachis hypogaea HOM05D002692 ORTHO05D002971 5.4e-07 58.5 85 35.3
Hma1.2p1_0165F.1_g073380 Hydrangea macrophylla HOM05D002692 ORTHO05D002971 5.4e-07 58.5 99 35.4
Hma1.2p1_1215F.1_g267610 Hydrangea macrophylla HOM05D002692 ORTHO05D002971 5.4e-07 58.5 99 35.4
Os04g0431100 Oryza sativa ssp. japonica HOM05D002692 ORTHO05D002971 5.4e-07 58.5 132 30.3
THA.LOC104820807 Tarenaya hassleriana HOM05D002692 ORTHO05D002971 5.4e-07 58.5 94 30.9
CSS0046415 Camellia sinensis var. sinensis HOM05D002692 ORTHO05D002971 7.0e-07 58.2 141 30.5
AUR62037072 Chenopodium quinoa HOM05D002692 ORTHO05D002971 7.0e-07 58.2 75 38.7
Haze_20372 Corylus avellana HOM05D002692 ORTHO05D002971 7.0e-07 58.2 83 34.9
Prupe.7G026500 Prunus persica HOM05D002692 ORTHO05D002971 7.0e-07 58.2 81 34.6
Rhsim03G0045300 Rhododendron simsii HOM05D002692 ORTHO05D002971 7.0e-07 58.2 90 38.9
SEGI_30184 Sequoiadendron giganteum HOM05D002692 ORTHO05D002971 7.0e-07 58.2 86 34.9
AL6G28800 Arabidopsis lyrata HOM05D002692 ORTHO05D002971 9.2e-07 57.8 93 35.5
EL10Ac8g19572 Beta vulgaris HOM05D002692 ORTHO05D002971 9.2e-07 57.8 81 37.0
CiPaw.10G124500 Carya illinoinensis HOM05D002692 ORTHO05D002971 9.2e-07 57.8 86 33.7
HPP92_017471 Vanilla planifolia HOM05D002692 ORTHO05D002971 9.2e-07 57.8 82 36.6
Thhalv10014120m.g Eutrema salsugineum HOM05D002692 ORTHO05D002971 1.2e-06 57.4 87 33.3
FAN23G2367 Fragaria x ananassa HOM05D002692 ORTHO05D002971 1.2e-06 57.4 79 36.7
Phvul.001G108000 Phaseolus vulgaris HOM05D002692 ORTHO05D002971 1.2e-06 57.4 96 32.3
Solyc10g081240.3 Solanum lycopersicum HOM05D002692 ORTHO05D002971 1.2e-06 57.4 79 35.4
Sopen10g031740 Solanum pennellii HOM05D002692 ORTHO05D002971 1.2e-06 57.4 79 35.4
arahy.Tifrunner.gnm1.ann1.CV0BIZ Arachis hypogaea HOM05D002692 ORTHO05D002971 1.6e-06 57.0 96 31.2
Carub.0006s1595 Capsella rubella HOM05D002692 ORTHO05D002971 1.6e-06 57.0 96 32.3
FAN19G0031 Fragaria x ananassa HOM05D002692 ORTHO05D002971 1.6e-06 57.0 88 34.1
CDE06G0979 Ceratophyllum demersum HOM05D002692 ORTHO05D002971 2.0e-06 56.6 88 33.0
Duzib128G1454 Durio zibethinus HOM05D002692 ORTHO05D002971 2.0e-06 56.6 95 34.7
SalBow6G4699 Salvia bowleyana HOM05D002692 ORTHO05D002971 2.0e-06 56.6 67 38.8
SalBow6G6564 Salvia bowleyana HOM05D002692 ORTHO05D002971 2.0e-06 56.6 67 38.8
FvH4_1g29620 Fragaria vesca HOM05D002692 ORTHO05D002971 2.7e-06 56.2 88 34.1
Lj1g0018873 Lotus japonicus HOM05D002692 ORTHO05D002971 2.7e-06 56.2 90 34.4
VMungo1383G1873 Vigna mungo HOM05D002692 ORTHO05D002971 2.7e-06 56.2 96 31.2
Zm00001eb246870 Zea mays HOM05D002692 ORTHO05D002971 2.7e-06 56.2 86 30.2
PSO339G1339 Papaver somniferum HOM05D002692 ORTHO05D002971 3.5e-06 55.8 82 36.6
Peaxi162Scf00153g00815 Petunia axillaris HOM05D002692 ORTHO05D002971 3.5e-06 55.8 72 34.7
SMO351G0488 Selaginella moellendorffii HOM05D002692 ORTHO05D002971 3.5e-06 55.8 67 40.3
AT5G17710 Arabidopsis thaliana HOM05D002692 ORTHO05D002971 4.5e-06 55.5 74 39.2
C02p09270 Brassica napus HOM05D002692 ORTHO05D002971 4.5e-06 55.5 89 33.7
BolC2t06835H Brassica oleracea HOM05D002692 ORTHO05D002971 4.5e-06 55.5 89 33.7
MD12G1014200 Malus domestica HOM05D002692 ORTHO05D002971 4.5e-06 55.5 103 29.1
Oeu020254.1 Olea europaea HOM05D002692 ORTHO05D002971 4.5e-06 55.5 84 33.3
PSO384G3705 Papaver somniferum HOM05D002692 ORTHO05D002971 4.5e-06 55.5 82 36.6
Sabra13G0059300 Salix brachista HOM05D002692 ORTHO05D002971 4.5e-06 55.5 70 35.7
Thecc.05G237600 Theobroma cacao HOM05D002692 ORTHO05D002971 4.5e-06 55.5 86 33.7
COL.COLO4_38562 Corchorus olitorius HOM05D002692 ORTHO05D002971 5.9e-06 55.1 86 34.9
DCAR_013500 Daucus carota HOM05D002692 ORTHO05D002971 5.9e-06 55.1 70 38.6
Dinv14558 Davidia involucrata HOM05D000048 ORTHO05D000436 5.9e-06 55.1 92 33.7
FAN28G1428 Fragaria x ananassa HOM05D002692 ORTHO05D002971 5.9e-06 55.1 79 35.4
Lalb_Chr14g0365041 Lupinus albus HOM05D002692 ORTHO05D002971 5.9e-06 55.1 87 33.3
Psat3g085320 Pisum sativum HOM05D002692 ORTHO05D002971 5.9e-06 55.1 94 34.0
Sp6g26510 Schrenkiella parvula HOM05D002692 ORTHO05D002971 5.9e-06 55.1 71 40.8
A02p04420 Brassica napus HOM05D002692 ORTHO05D002971 7.7e-06 54.7 89 32.6
BraA02t05406Z Brassica rapa HOM05D002692 ORTHO05D002971 7.7e-06 54.7 89 32.6


User provided reference genes

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