Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.4e-82 309.7 164 100.0
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 3.3e-65 251.9 176 80.7
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 9.7e-65 250.4 175 80.6
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.3e-64 250.0 172 82.0
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.8e-64 248.8 175 80.0
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.2e-60 235.0 161 81.4
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.2e-60 234.2 160 81.9
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 4.0e-58 228.4 176 72.2
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 4.4e-57 224.9 176 70.5
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 4.4e-57 224.9 176 71.0
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 2.2e-56 222.6 175 70.9
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.2e-56 222.6 176 71.0
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 2.8e-56 222.2 176 71.0
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 3.7e-56 221.9 176 69.3
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 8.3e-56 220.7 176 69.9
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.4e-55 219.9 177 68.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.8e-55 219.5 176 69.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 1.8e-55 219.5 177 67.8
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 2.4e-55 219.2 177 67.8
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 3.1e-55 218.8 175 70.3
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 3.1e-55 218.8 175 70.3
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 3.1e-55 218.8 176 67.6
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 4.1e-55 218.4 176 68.8
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 9.1e-55 217.2 176 69.3
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 2.0e-54 216.1 176 68.2
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.0e-54 216.1 177 67.8
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.0e-54 216.1 176 68.2
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.7e-54 215.7 176 67.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.7e-54 215.7 176 67.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.7e-54 215.7 175 68.0
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 2.7e-54 215.7 176 68.8
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 3.5e-54 215.3 176 67.6
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 4.5e-54 214.9 176 67.6
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 4.5e-54 214.9 176 67.6
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 4.5e-54 214.9 176 67.6
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 4.5e-54 214.9 176 67.6
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 5.9e-54 214.5 177 67.2
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 5.9e-54 214.5 176 67.6
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.0e-53 213.8 176 68.8
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 1.0e-53 213.8 177 65.5
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.3e-53 213.4 176 66.5
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.3e-53 213.4 176 68.2
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 1.3e-53 213.4 176 67.6
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.3e-53 213.4 174 68.4
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.7e-53 213.0 176 68.2
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 3.8e-53 211.8 176 66.5
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 6.5e-53 211.1 176 65.9
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 6.5e-53 211.1 176 67.0
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 6.5e-53 211.1 173 68.2
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 6.5e-53 211.1 176 66.5
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 6.5e-53 211.1 169 69.2
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 6.5e-53 211.1 169 68.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.1e-52 210.3 176 65.9
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.1e-52 210.3 176 66.5
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.1e-52 210.3 176 67.0
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.1e-52 210.3 176 65.9
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.1e-52 210.3 176 65.9
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 1.1e-52 210.3 177 66.1
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.5e-52 209.9 173 66.5
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.5e-52 209.9 176 65.3
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.9e-52 209.5 169 69.8
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.5e-52 209.1 176 65.9
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 2.5e-52 209.1 176 66.5
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 3.3e-52 208.8 177 66.1
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.2e-52 208.4 176 65.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 4.2e-52 208.4 173 67.1
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 9.5e-52 207.2 176 65.9
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 9.5e-52 207.2 173 66.5
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 9.5e-52 207.2 173 66.5
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.2e-51 206.8 176 64.2
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.2e-51 206.8 175 67.4
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.6e-51 206.5 176 64.8
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.6e-51 206.5 179 63.7
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 2.1e-51 206.1 176 65.9
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 8.0e-51 204.1 215 57.2
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.0e-50 203.8 171 66.7
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.0e-50 203.8 176 62.5
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.8e-50 203.0 176 63.1
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 3.0e-50 202.2 178 65.7
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 3.0e-50 202.2 176 65.3
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 3.0e-50 202.2 173 65.9
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 4.0e-50 201.8 176 64.8
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 8.9e-50 200.7 179 64.8
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 8.9e-50 200.7 176 62.5
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 2.0e-49 199.5 176 62.5
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.6e-49 199.1 176 64.8
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 4.4e-49 198.4 176 61.9
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 5.7e-49 198.0 178 63.5
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 7.5e-49 197.6 176 64.8
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 1.3e-48 196.8 179 62.6
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 3.7e-48 195.3 176 63.6
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 8.3e-48 194.1 177 61.6
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 8.3e-48 194.1 176 61.4
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 1.4e-47 193.4 177 61.6
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 1.4e-47 193.4 177 61.6
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 1.8e-47 193.0 177 61.6
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 1.8e-47 193.0 177 61.6
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 2.4e-47 192.6 131 74.8
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 5.4e-47 191.4 176 61.4
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 1.6e-46 189.9 177 61.0
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 5.9e-46 188.0 109 93.6
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.3e-45 186.8 132 73.5
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 5.0e-45 184.9 176 55.7
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 6.6e-45 184.5 131 71.8
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 8.6e-45 184.1 131 74.8
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 5.6e-44 181.4 155 68.4
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 9.5e-44 180.6 169 57.4
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 1.6e-43 179.9 176 58.0
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 2.1e-43 179.5 173 59.5
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.8e-43 179.1 144 69.4
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 3.6e-43 178.7 173 59.5
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 2.3e-42 176.0 173 59.0
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 5.2e-42 174.9 161 57.8
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 5.2e-42 174.9 147 68.7
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.5e-41 173.3 173 60.1
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 7.5e-41 171.0 132 68.2
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 2.7e-38 162.5 147 63.3
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 3.5e-38 162.2 160 58.1
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 9.5e-36 154.1 162 58.0
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 2.8e-35 152.5 168 51.8
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 6.2e-35 151.4 175 46.3
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.1e-34 150.6 170 49.4
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 8.9e-34 147.5 147 62.6
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 2.6e-33 146.0 78 91.0
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 8.3e-32 141.0 168 48.2
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 9.2e-31 137.5 131 52.7
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 3.9e-21 105.5 91 71.4
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.6e-19 100.1 170 41.2
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.9e-16 89.4 174 37.9
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.1e-15 87.4 86 62.8
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 1.9e-15 86.7 51 80.4
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 7.6e-09 64.7 173 32.9
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 9.9e-09 64.3 89 50.6


User provided reference genes

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