Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.7e-123 445.3 213 100.0
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.6e-107 391.3 213 87.8
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.7e-106 389.4 213 87.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.6e-104 381.7 224 83.5
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.1e-104 380.6 225 83.1
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.8e-103 379.4 225 82.7
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 3.4e-102 375.2 213 85.0
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 3.8e-101 371.7 213 84.5
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 3.8e-93 345.1 209 74.6
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 1.6e-91 339.7 209 76.1
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 7.9e-91 337.4 206 76.7
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 3.9e-90 335.1 211 74.9
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 5.1e-90 334.7 211 75.8
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 5.1e-90 334.7 211 73.9
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 8.7e-90 334.0 211 76.3
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 1.1e-89 333.6 209 74.2
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 4.3e-89 331.6 209 74.6
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.8e-87 326.2 209 72.2
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.6e-86 322.4 207 71.5
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.6e-86 322.4 211 72.0
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.1e-84 317.0 236 66.9
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.9e-84 316.2 208 69.2
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 5.5e-84 314.7 211 73.0
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.2e-83 313.5 209 70.8
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 4.6e-83 311.6 210 71.0
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.3e-82 310.1 210 68.1
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.1e-81 307.0 211 70.1
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 2.5e-81 305.8 207 71.5
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 2.5e-81 305.8 211 68.7
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 5.7e-81 304.7 208 67.8
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.3e-80 303.5 207 68.6
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 4.8e-80 301.6 212 67.9
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 6.2e-80 301.2 208 69.7
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 6.2e-80 301.2 204 69.6
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 8.2e-80 300.8 209 64.6
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 8.2e-80 300.8 209 64.1
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.8e-79 299.7 207 67.6
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.9e-79 297.7 207 67.6
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.9e-79 297.7 207 67.6
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.9e-79 297.7 207 67.6
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.9e-79 297.7 207 67.6
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 9.0e-79 297.4 222 64.9
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 9.0e-79 297.4 208 67.8
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 9.0e-79 297.4 208 66.8
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.5e-78 296.6 207 67.6
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.5e-78 296.6 213 63.8
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 3.4e-78 295.4 207 68.1
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 3.4e-78 295.4 207 65.2
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 4.5e-78 295.0 208 66.8
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.7e-77 293.1 201 68.2
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 2.9e-77 292.4 193 72.0
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 3.8e-77 292.0 207 66.7
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 6.5e-77 291.2 193 71.0
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 6.5e-77 291.2 206 66.5
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.1e-76 290.4 209 64.6
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.4e-76 290.0 208 65.9
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 2.5e-76 289.3 212 63.2
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 5.5e-76 288.1 207 66.7
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 9.3e-76 287.3 212 63.2
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.2e-75 287.0 207 65.7
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.6e-75 286.6 212 66.0
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-75 286.6 209 65.6
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-75 286.6 209 65.6
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 3.5e-75 285.4 193 71.5
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.5e-75 285.4 209 65.1
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.0e-74 283.9 207 66.7
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 1.8e-74 283.1 209 66.0
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 6.7e-74 281.2 207 65.2
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 9.7e-73 277.3 207 65.2
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 3.7e-72 275.4 212 60.8
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 1.4e-71 273.5 201 66.2
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 1.4e-71 273.5 201 66.2
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.4e-71 273.5 210 61.0
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.8e-71 273.1 200 66.5
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 3.1e-71 272.3 193 66.8
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 4.1e-71 271.9 193 67.4
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 1.3e-69 266.9 227 61.2
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.1e-68 263.8 195 68.2
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 3.2e-68 262.3 173 67.1
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 4.2e-68 261.9 219 60.3
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 7.2e-68 261.2 288 49.3
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.0e-66 257.3 208 58.7
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.5e-65 252.7 208 57.7
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 9.7e-65 250.8 204 58.3
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 1.3e-61 240.4 208 58.2
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.2e-61 239.6 199 57.8
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 3.2e-60 235.7 199 54.8
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 2.2e-56 223.0 144 74.3
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.4e-55 220.3 144 73.6
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 3.1e-55 219.2 155 70.3
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 4.2e-52 208.8 229 48.5
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.2e-51 207.2 177 58.2
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 2.7e-51 206.1 202 50.0
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.2e-45 186.4 107 76.6
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.8e-45 185.7 104 81.7
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 8.5e-45 184.5 104 80.8
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.1e-44 184.1 147 65.3
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 7.2e-44 181.4 209 51.7
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.8e-42 176.8 124 65.3
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.7e-38 162.9 102 74.5
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 5.0e-37 158.7 124 59.7
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.6e-33 146.4 145 49.0
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 5.7e-33 145.2 197 41.6
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.3e-32 144.1 147 48.3
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 7.7e-30 134.8 210 38.1
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.6e-27 127.1 90 68.9
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 8.0e-27 124.8 89 68.5
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 3.4e-25 119.4 65 78.5
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 2.2e-24 116.7 237 34.2
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.2e-24 116.7 89 62.9
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.8e-22 108.2 97 54.6
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.6e-21 104.8 90 56.7
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-20 104.4 87 57.5
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.9e-20 103.6 87 57.5
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.9e-20 103.6 90 55.6
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.9e-20 103.6 87 57.5
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.9e-20 103.6 87 57.5
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.5e-20 103.2 87 56.3
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.3e-20 101.7 90 55.6
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 4.0e-18 95.9 91 53.8
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 9.8e-17 91.3 92 52.2
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 6.4e-16 88.6 204 27.9
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 3.2e-15 86.3 42 88.1
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 5.4e-07 58.9 39 66.7


User provided reference genes

Program Settings