Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0233421 Rosa chinensis HOM05D001304 ORTHO05D015286 4.0e-47 191.0 93 100.0
RcHm_v2.0_Chr7g0233391 Rosa chinensis HOM05D001304 ORTHO05D003803 1.2e-16 89.7 48 77.1
CAN.G1061.34 Capsicum annuum HOM05D001304 ORTHO05D003803 4.9e-13 77.8 61 55.7
Oeu007434.1 Olea europaea HOM05D001304 ORTHO05D003803 1.4e-12 76.3 61 52.5
Oeu054746.2 Olea europaea HOM05D001304 ORTHO05D003803 1.9e-12 75.9 60 55.0
Atru.chr3.1158 Acer truncatum HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 55.0
Atru.chr3.1174 Acer truncatum HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 55.0
AL8G43210 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 53.3
AT5G65620 Arabidopsis thaliana HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 53.3
MSTRG.23623 Avicennia marina HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 51.7
CARHR202760 Cardamine hirsuta HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 51.7
Migut.H00290 Erythranthe guttata HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 53.3
Thhalv10003666m.g Eutrema salsugineum HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 53.3
THA.LOC104798525 Tarenaya hassleriana HOM05D001304 ORTHO05D003803 2.4e-12 75.5 60 53.3
BcaC01g02851 Brassica carinata HOM05D001304 ORTHO05D003803 3.2e-12 75.1 60 51.7
A06p32460 Brassica napus HOM05D001304 ORTHO05D003803 3.2e-12 75.1 60 51.7
C03p60130 Brassica napus HOM05D001304 ORTHO05D003803 3.2e-12 75.1 60 51.7
BolC3t18277H Brassica oleracea HOM05D001304 ORTHO05D003803 3.2e-12 75.1 60 51.7
BraA06t26170Z Brassica rapa HOM05D001304 ORTHO05D003803 3.2e-12 75.1 60 51.7
Sp2g28710 Schrenkiella parvula HOM05D001304 ORTHO05D003803 3.2e-12 75.1 60 51.7
SGA_v2.0_scaffold121G33140 Striga asiatica HOM05D001304 ORTHO05D003803 3.2e-12 75.1 60 51.7
BcaB01g05521 Brassica carinata HOM05D001304 ORTHO05D003803 4.2e-12 74.7 60 51.7
C03p05320 Brassica napus HOM05D001304 ORTHO05D003803 4.2e-12 74.7 60 51.7
BolC3t13045H Brassica oleracea HOM05D001304 ORTHO05D003803 4.2e-12 74.7 60 51.7
AL6G21070 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
AT5G10540 Arabidopsis thaliana HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
BcaB05g21489 Brassica carinata HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
BcaC03g13317 Brassica carinata HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
A03p04640 Brassica napus HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
C02p04530 Brassica napus HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
BolC2t06413H Brassica oleracea HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
BraA03t09805Z Brassica rapa HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
Carub.0006s0902 Capsella rubella HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
Carub.0008s2649 Capsella rubella HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
CARHR279570 Cardamine hirsuta HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
Sp6g32890 Schrenkiella parvula HOM05D001304 ORTHO05D003803 5.4e-12 74.3 60 51.7
Ciclev10024919m.g Citrus clementina HOM05D001304 ORTHO05D003803 7.1e-12 73.9 60 51.7
DCAR_010514 Daucus carota HOM05D001304 ORTHO05D003803 7.1e-12 73.9 55 56.4
Thhalv10012826m.g Eutrema salsugineum HOM05D001304 ORTHO05D003803 7.1e-12 73.9 60 51.7
Duzib147G1544 Durio zibethinus HOM05D001304 ORTHO05D003803 9.3e-12 73.6 60 53.3
Lj2C429T16 Lonicera japonica HOM05D001304 ORTHO05D003803 9.3e-12 73.6 60 51.7
Sc16g0000720 Simmondsia chinensis HOM05D001304 ORTHO05D003803 9.3e-12 73.6 60 51.7
Thecc.01G084400 Theobroma cacao HOM05D001304 ORTHO05D003803 9.3e-12 73.6 60 51.7
Actinidia22785 Actinidia chinensis HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
arahy.Tifrunner.gnm1.ann1.2M0S5R Arachis hypogaea HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
arahy.Tifrunner.gnm1.ann1.NJ8Y8Y Arachis hypogaea HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
arahy.Tifrunner.gnm1.ann1.U4N2LF Arachis hypogaea HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
arahy.Tifrunner.gnm1.ann1.Y7B72I Arachis hypogaea HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
A02p00550 Brassica napus HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 50.0
BraA02t05038Z Brassica rapa HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 50.0
CSS0022889 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
CSS0036027 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
COL.COLO4_11684 Corchorus olitorius HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
DCAR_025863 Daucus carota HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
ECA238G0162 Erigeron canadensis HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
ECA246G4544 Erigeron canadensis HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Glyma.01G020300 Glycine max HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Glyma.09G202100 Glycine max HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Gohir.A11G208500 Gossypium hirsutum HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Gohir.D11G214900 Gossypium hirsutum HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Gorai.007G230700 Gossypium raimondii HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
HanXRQChr14g0447101 Helianthus annuus HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Lj4A176T36 Lonicera japonica HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Lj2g0015774 Lotus japonicus HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Lalb_Chr09g0325801 Lupinus albus HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
MD01G1044200 Malus domestica HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Phvul.002G143600 Phaseolus vulgaris HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
Prupe.6G209200 Prunus persica HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
vmacro18038 Vaccinium macrocarpon HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
VMungo1215G0027 Vigna mungo HOM05D001304 ORTHO05D003803 1.2e-11 73.2 60 51.7
FvH4_1g19050 Fragaria vesca HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
FAN19G0255 Fragaria x ananassa HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
FAN23G1646 Fragaria x ananassa HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
FAN26G1340 Fragaria x ananassa HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
FAN28G2550 Fragaria x ananassa HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
Gohir.A12G082400 Gossypium hirsutum HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
Gohir.D12G080400 Gossypium hirsutum HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
Gorai.008G088600 Gossypium raimondii HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
RcHm_v2.0_Chr2g0110061 Rosa chinensis HOM05D001304 ORTHO05D003803 1.6e-11 72.8 60 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3512 Anthoceros agrestis HOM05D001304 ORTHO05D003803 2.1e-11 72.4 60 50.0
Mapoly0137s0031 Marchantia polymorpha HOM05D001304 ORTHO05D003803 2.1e-11 72.4 60 48.3
Cfa006834 Carpinus fangiana HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Ca_13465_v3 Cicer arietinum L. HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Haze_03928 Corylus avellana HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Dinv27004 Davidia involucrata HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Lsat_1_v5_gn_2_82261 Lactuca sativa HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Lalb_Chr05g0216211 Lupinus albus HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Potri.007G004600 Populus trichocarpa HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Potri.014G010100 Populus trichocarpa HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
QL06p037353 Quercus lobata HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Sabra14G0001500 Salix brachista HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Sabra14G0004300 Salix brachista HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Hund14168 Selenicereus undatus HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
unitig_736.g22352 Utricularia gibba HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 48.3
GSVIVG01003850001 Vitis vinifera HOM05D001304 ORTHO05D003803 2.7e-11 72.0 60 50.0
Aa31LG1G16440 Aethionema arabicum HOM05D001304 ORTHO05D003803 3.5e-11 71.6 60 48.3
Cpa.g.sc129.15 Carica papaya HOM05D001304 ORTHO05D003803 3.5e-11 71.6 60 50.0
DCAR_021620 Daucus carota HOM05D001304 ORTHO05D003803 3.5e-11 71.6 60 50.0
DCAR_021641 Daucus carota HOM05D001304 ORTHO05D003803 3.5e-11 71.6 60 50.0
DCAR_032315 Daucus carota HOM05D001304 ORTHO05D015286 3.5e-11 71.6 60 50.0
SalBow3G2076 Salvia bowleyana HOM05D001304 ORTHO05D003803 3.5e-11 71.6 48 58.3
SalBow3G4364 Salvia bowleyana HOM05D001304 ORTHO05D003803 3.5e-11 71.6 48 58.3
MBI16_g36493_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 4.6e-11 71.2 57 56.1
Medtr5g030940 Medicago truncatula HOM05D001304 ORTHO05D003803 4.6e-11 71.2 60 48.3
Zm00001eb259450 Zea mays HOM05D001304 ORTHO05D003803 4.6e-11 71.2 60 48.3
Actinidia15931 Actinidia chinensis HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
CSS0037118 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
CiPaw.08G145000 Carya illinoinensis HOM05D001304 ORTHO05D003803 6.0e-11 70.9 60 48.3
CBR_g51495 Chara braunii HOM05D001304 ORTHO05D003803 6.0e-11 70.9 60 48.3
ClCG07G009830 Citrullus lanatus HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
Cc07_g07930 Coffea canephora HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
CsaV3_4G008500 Cucumis sativus L. HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
Eucgr.I00594 Eucalyptus grandis HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
HanXRQChr12g0375551 Helianthus annuus HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
Hma1.2p1_0080F.1_g042070 Hydrangea macrophylla HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
MBI16_g33083_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 6.0e-11 70.9 57 54.4
Manes.12G121600 Manihot esculenta HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
Manes.13G103984 Manihot esculenta HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
Nn5g29786 Nelumbo nucifera HOM05D001304 ORTHO05D003803 6.0e-11 70.9 60 50.0
Peaxi162Scf00703g00111 Petunia axillaris HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
Rhsim10G0079900 Rhododendron simsii HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
Sed0016167 Sechium edule HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
TWI53G1123 Tripterygium wilfordii HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
vmacro05523 Vaccinium macrocarpon HOM05D001304 ORTHO05D003803 6.0e-11 70.9 48 60.4
CAN.G1061.30 Capsicum annuum HOM05D001304 ORTHO05D003803 7.8e-11 70.5 48 58.3
MBI16_g10449_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 7.8e-11 70.5 60 48.3
Nitab4.5_0000291g0100 Nicotiana tabacum HOM05D001304 ORTHO05D003803 7.8e-11 70.5 48 58.3
Nitab4.5_0007512g0010 Nicotiana tabacum HOM05D001304 ORTHO05D003803 7.8e-11 70.5 48 58.3
Solyc02g091580.4 Solanum lycopersicum HOM05D001304 ORTHO05D003803 7.8e-11 70.5 48 58.3
Sopen02g036200 Solanum pennellii HOM05D001304 ORTHO05D003803 7.8e-11 70.5 48 58.3
PGSC0003DMG400030613 Solanum tuberosum HOM05D001304 ORTHO05D003803 7.8e-11 70.5 48 58.3
ATR0800G081 Amborella trichopoda HOM05D001304 ORTHO05D003803 1.0e-10 70.1 60 48.3
Nn1g05669 Nelumbo nucifera HOM05D001304 ORTHO05D003803 1.0e-10 70.1 60 48.3
Os02g0830100 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D003803 1.0e-10 70.1 60 46.7
TAR625G1042 Trochodendron aralioides HOM05D001304 ORTHO05D003803 1.0e-10 70.1 60 50.0
HPP92_025840 Vanilla planifolia HOM05D001304 ORTHO05D003803 1.0e-10 70.1 60 50.0
Atru.chr3.1159 Acer truncatum HOM05D001304 ORTHO05D003803 1.3e-10 69.7 57 50.9
Atru.chr3.1176 Acer truncatum HOM05D001304 ORTHO05D003803 1.3e-10 69.7 57 50.9
AUR62032883 Chenopodium quinoa HOM05D001304 ORTHO05D003803 1.3e-10 69.7 48 58.3
Eucgr.I00597 Eucalyptus grandis HOM05D001304 ORTHO05D003803 1.3e-10 69.7 60 50.0
PGR031G2110 Punica granatum HOM05D001304 ORTHO05D003803 1.3e-10 69.7 48 58.3
TPR.G37069 Trifolium pratense HOM05D001304 ORTHO05D003803 1.3e-10 69.7 48 58.3
Psat2g133960 Pisum sativum HOM05D001304 ORTHO05D003803 1.7e-10 69.3 60 45.0
CAN.G1061.32 Capsicum annuum HOM05D001304 ORTHO05D003803 2.3e-10 68.9 48 58.3
TWI77G0616 Tripterygium wilfordii HOM05D001304 ORTHO05D003803 2.3e-10 68.9 48 58.3
TAR381G0455 Trochodendron aralioides HOM05D001304 ORTHO05D003803 2.3e-10 68.9 60 48.3
CiPaw.07G043000 Carya illinoinensis HOM05D001304 ORTHO05D003803 3.0e-10 68.6 48 56.2
CDE02G1292 Ceratophyllum demersum HOM05D001304 ORTHO05D003803 3.0e-10 68.6 48 56.2
CDE04G3591 Ceratophyllum demersum HOM05D001304 ORTHO05D003803 3.0e-10 68.6 48 56.2
PSO017G2184 Papaver somniferum HOM05D001304 ORTHO05D003803 3.0e-10 68.6 60 48.3
PSO478G2230 Papaver somniferum HOM05D001304 ORTHO05D003803 3.0e-10 68.6 60 48.3
Sabra07G0003300 Salix brachista HOM05D001304 ORTHO05D003803 3.0e-10 68.6 48 58.3
MELO3C016079.2 Cucumis melo HOM05D001304 ORTHO05D003803 3.9e-10 68.2 48 58.3
Ah.02g129170 Amaranthus hybridus HOM05D001304 ORTHO05D003803 5.1e-10 67.8 48 56.2
ATR0800G171 Amborella trichopoda HOM05D001304 ORTHO05D015286 5.1e-10 67.8 60 46.7
SMO347G0350 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 5.1e-10 67.8 60 43.3
Sc12g0003840 Simmondsia chinensis HOM05D001304 ORTHO05D003803 5.1e-10 67.8 59 47.5
CSS0040295 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 6.6e-10 67.4 60 48.3
SMO353G0212 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 8.7e-10 67.0 47 57.4
QL01p014133 Quercus lobata HOM05D001304 ORTHO05D003803 1.1e-09 66.6 60 46.7
Cfa010111 Carpinus fangiana HOM05D001304 ORTHO05D003803 1.5e-09 66.2 60 46.7
Actinidia24167 Actinidia chinensis HOM05D001304 ORTHO05D003803 1.9e-09 65.9 60 46.7
Aqoxy6G00643 Aquilegia oxysepala HOM05D001304 ORTHO05D003803 2.5e-09 65.5 60 45.0
Lsat_1_v5_gn_4_28701 Lactuca sativa HOM05D001304 ORTHO05D015286 2.5e-09 65.5 46 58.7
Dinv29403 Davidia involucrata HOM05D001304 ORTHO05D003803 3.3e-09 65.1 47 55.3
SalBow3G1603 Salvia bowleyana HOM05D001304 ORTHO05D003803 3.3e-09 65.1 60 45.0
Oeu026995.1 Olea europaea HOM05D001304 ORTHO05D003803 4.3e-09 64.7 47 55.3
GSVIVG01031425001 Vitis vinifera HOM05D001304 ORTHO05D003803 4.3e-09 64.7 68 45.6
QL11p013027 Quercus lobata HOM05D001304 ORTHO05D003803 5.6e-09 64.3 61 47.5
SMO134G0121 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 9.6e-09 63.5 51 52.9
SMO134G0101 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 1.3e-08 63.2 48 54.2
SMO274G0011 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 1.3e-08 63.2 48 54.2
Lsat_1_v5_gn_2_18321 Lactuca sativa HOM05D001304 ORTHO05D015286 2.1e-08 62.4 46 56.5
Lsat_1_v5_gn_7_30280 Lactuca sativa HOM05D001304 ORTHO05D015286 4.8e-08 61.2 53 50.9
Lsat_1_v5_gn_2_82080 Lactuca sativa HOM05D001304 ORTHO05D015286 1.8e-07 59.3 47 55.3
Cre13.g572900 Chlamydomonas reinhardtii HOM05D001304 ORTHO05D003803 4.0e-07 58.2 60 40.0
CAN.G508.27 Capsicum annuum HOM05D001304 ORTHO05D005183 6.9e-07 57.4 48 50.0
Lsat_1_v5_gn_7_58620 Lactuca sativa HOM05D001304 ORTHO05D015286 9.0e-07 57.0 45 53.3
MCO02G036 Micromonas commoda HOM05D001304 ORTHO05D003803 3.4e-06 55.1 60 38.3
Lsat_1_v5_gn_4_59680 Lactuca sativa HOM05D001304 ORTHO05D015286 5.8e-06 54.3 61 44.3
Lsat_1_v5_gn_2_26300 Lactuca sativa HOM05D001304 ORTHO05D015286 7.6e-06 53.9 39 61.5


User provided reference genes

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