Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 3.8e-235 817.8 407 100.0
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.7e-206 721.5 406 88.7
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.8e-206 721.1 406 88.7
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 7.0e-205 717.2 406 88.4
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.2e-203 712.2 415 85.8
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.1e-168 597.0 410 74.9
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 6.2e-161 571.2 412 72.6
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 3.0e-147 525.8 416 66.3
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 3.2e-141 505.8 405 66.4
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 2.1e-137 493.0 404 65.8
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 7.1e-133 478.0 418 60.8
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-132 476.9 380 64.5
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 3.5e-132 475.7 418 60.5
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 4.6e-132 475.3 455 58.0
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 6.0e-132 474.9 404 61.4
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.0e-132 474.9 479 55.9
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 9.6e-130 467.6 409 60.9
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-128 463.8 399 61.9
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.1e-128 462.6 385 63.6
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 4.0e-128 462.2 399 61.7
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.0e-127 459.9 394 61.9
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.2e-126 456.4 415 61.0
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.9e-125 453.4 422 60.0
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 2.5e-125 453.0 419 58.2
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.2e-125 452.6 402 59.5
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 9.3e-125 451.1 408 58.1
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.6e-124 450.3 409 59.7
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 2.7e-124 449.5 408 58.3
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 7.9e-124 448.0 410 57.6
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.9e-123 445.7 410 57.8
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 1.1e-122 444.1 396 59.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.7e-122 441.8 399 58.6
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.3e-121 440.7 403 57.3
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 2.8e-121 439.5 410 56.6
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 3.7e-121 439.1 410 56.6
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.2e-119 434.1 404 58.9
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 2.0e-119 433.3 421 57.5
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.0e-118 431.0 419 56.8
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.8e-118 429.1 402 56.7
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 5.5e-117 425.2 402 58.2
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 6.1e-116 421.8 405 55.1
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 7.9e-116 421.4 405 55.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.4e-115 420.6 413 56.2
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.3e-115 419.9 409 57.0
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 3.9e-115 419.1 414 55.6
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.1e-114 417.5 410 53.9
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 2.8e-113 412.9 401 53.4
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.1e-112 411.0 378 58.7
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.4e-112 410.6 402 56.7
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.8e-112 410.2 437 54.0
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 5.3e-112 408.7 398 55.0
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 4.5e-111 405.6 402 55.0
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.3e-110 404.1 491 49.5
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.7e-110 403.7 403 53.6
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.1e-109 401.0 402 55.5
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 4.2e-109 399.1 402 52.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 9.4e-109 397.9 407 52.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 9.4e-109 397.9 414 53.9
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 6.1e-108 395.2 395 54.2
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.0e-107 394.4 370 56.5
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.9e-107 392.5 410 52.9
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.0e-106 390.2 406 52.7
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 2.0e-106 390.2 401 52.9
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.6e-106 389.8 407 54.5
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.6e-106 389.8 272 68.8
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 9.7e-106 387.9 406 51.7
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 6.3e-105 385.2 406 52.7
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 6.3e-105 385.2 406 52.7
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 1.8e-104 383.6 408 53.7
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.4e-104 383.3 399 52.4
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 7.0e-104 381.7 416 52.6
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 7.0e-104 381.7 416 52.6
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 4.5e-103 379.0 400 52.0
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.2e-102 376.7 304 60.2
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.9e-102 376.3 405 51.4
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.9e-102 376.3 421 51.8
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 2.5e-101 373.2 396 52.8
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 2.5e-101 373.2 389 53.0
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 4.2e-101 372.5 348 58.9
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 7.2e-101 371.7 396 51.0
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 7.2e-101 371.7 438 50.0
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.1e-100 370.2 411 48.9
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.7e-100 369.8 404 50.7
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 6.1e-100 368.6 408 51.2
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.3e-99 366.7 391 51.7
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 5.2e-99 365.5 414 51.4
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 5.2e-99 365.5 310 61.9
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-98 364.4 391 52.4
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.5e-98 364.0 401 50.6
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 3.7e-97 359.4 395 52.9
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 4.8e-97 359.0 298 60.7
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.1e-96 357.8 298 61.1
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.8e-96 357.1 287 63.1
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 7.0e-96 355.1 401 51.9
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 4.5e-95 352.4 407 48.6
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.0e-94 351.3 410 52.7
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 5.0e-94 349.0 368 51.6
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.6e-92 342.8 443 45.6
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 1.5e-90 337.4 405 48.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 5.7e-90 335.5 400 49.5
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.3e-89 334.3 510 42.4
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.8e-89 333.2 443 44.0
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 3.7e-89 332.8 404 47.8
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 4.7e-84 315.8 393 48.9
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 6.8e-83 312.0 275 57.1
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 4.4e-82 309.3 276 56.5
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 4.4e-82 309.3 276 56.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 7.5e-82 308.5 275 56.7
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 7.5e-82 308.5 275 56.7
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 8.3e-81 305.1 400 46.8
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.6e-76 290.8 290 53.8
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 7.5e-74 282.0 438 40.9
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.8e-72 277.3 265 58.1
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.3e-70 270.4 222 62.2
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 3.3e-69 266.5 322 45.7
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.8e-68 263.5 291 48.8
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 4.7e-68 262.7 336 47.6
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 4.1e-64 249.6 243 52.7
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.5e-63 246.5 283 48.4
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 1.0e-62 245.0 323 47.1
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.3e-59 233.8 167 68.3
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 3.9e-54 216.5 299 41.1
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.1e-52 210.7 188 56.9
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.3e-51 207.2 291 44.0
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 4.1e-48 196.4 286 40.2
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 6.6e-46 189.1 266 46.6
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.9e-45 187.6 257 45.1
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.5e-42 177.9 130 66.2
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 4.4e-42 176.4 256 40.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-41 174.5 127 65.4
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 4.9e-41 172.9 139 61.9
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 7.1e-40 169.1 276 39.9
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.2e-39 168.3 260 38.1
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-35 154.8 93 75.3
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.4e-34 150.2 186 46.8
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.1e-32 145.2 181 44.8
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.4e-32 144.8 181 45.3
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.7e-31 140.6 214 44.4
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-29 135.2 102 64.7
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.2e-28 129.4 80 75.0
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.8e-26 122.9 64 78.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 7.6e-26 122.5 218 41.3
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 3.8e-25 120.2 98 56.1
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 3.5e-23 113.6 69 75.4
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-23 113.6 66 72.7
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.0e-23 112.8 133 50.4
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.4e-19 101.7 59 78.0
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 1.4e-19 101.7 266 30.5
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 5.3e-19 99.8 62 74.2
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.2e-17 94.4 55 74.5
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 2.2e-17 94.4 179 35.8
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.2e-16 90.1 48 72.9
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.2e-16 90.1 165 37.6
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.3e-14 84.3 96 45.8
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.9e-13 81.3 63 61.9
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.8e-12 77.4 55 65.5
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 3.1e-11 73.9 94 50.0
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.9e-09 67.4 46 60.9
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-08 65.5 92 40.2
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 4.6e-07 60.1 71 50.7
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.3e-06 58.5 136 34.6
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.0e-06 57.4 49 57.1


User provided reference genes

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