Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 3.3e-231 804.7 400 100.0
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 5.0e-179 631.3 417 77.9
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 3.2e-178 628.6 413 77.7
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 8.7e-176 620.5 414 76.1
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 9.0e-173 610.5 417 76.3
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.5e-172 609.8 422 74.2
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 5.9e-172 607.8 422 74.2
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.7e-171 606.3 416 76.7
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 3.8e-171 605.1 418 77.8
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.8e-171 605.1 416 76.4
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 2.3e-168 595.9 422 72.5
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.1e-167 593.6 418 73.7
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.8e-163 578.6 414 72.5
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.4e-160 570.1 398 73.4
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 4.0e-112 409.1 404 56.2
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 5.8e-111 405.2 391 56.3
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.4e-110 401.7 399 54.9
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 6.4e-110 401.7 391 55.8
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.1e-109 401.0 404 55.0
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 1.1e-109 401.0 404 55.7
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 5.4e-109 398.7 406 55.7
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 9.2e-109 397.9 406 53.9
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.7e-108 396.4 404 55.2
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.7e-108 396.4 391 56.0
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 3.5e-108 396.0 383 56.4
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 7.8e-108 394.8 395 55.9
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.3e-107 393.3 406 54.9
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 3.0e-107 392.9 404 52.2
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.9e-107 392.5 403 54.1
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 8.6e-107 391.3 422 52.8
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 8.6e-107 391.3 402 53.7
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.1e-106 391.0 402 54.0
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 5.6e-106 388.7 391 55.5
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.2e-105 387.5 411 52.3
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 6.2e-105 385.2 400 53.5
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.2e-104 382.1 392 53.3
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 6.8e-104 381.7 403 52.4
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.5e-103 380.6 404 53.0
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.4e-103 379.4 406 51.7
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.2e-102 376.7 389 52.2
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.2e-102 376.7 389 52.2
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.7e-102 375.9 387 53.5
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.7e-102 375.9 393 53.4
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 3.7e-102 375.9 395 53.2
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 4.9e-102 375.6 410 52.0
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.9e-102 375.6 387 53.0
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 8.4e-102 374.8 382 53.9
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 5.4e-101 372.1 404 49.5
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.6e-100 370.5 411 50.9
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.6e-100 369.0 391 52.4
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.6e-100 369.0 395 52.4
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.0e-100 368.6 398 52.5
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.8e-100 368.2 391 52.2
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.0e-99 367.9 388 51.3
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.7e-99 367.1 409 48.9
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.3e-99 366.7 413 48.2
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.6e-99 365.2 381 52.5
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-98 364.4 404 52.5
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 1.5e-98 364.0 393 51.7
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.5e-98 364.0 391 51.7
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.5e-98 364.0 404 52.7
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.5e-98 363.2 374 54.5
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.5e-98 363.2 370 52.4
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 3.3e-98 362.8 396 50.8
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.3e-98 362.8 408 50.5
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 5.6e-98 362.1 412 48.8
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 2.8e-97 359.8 384 51.0
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 3.6e-97 359.4 392 50.5
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 6.2e-97 358.6 395 48.9
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 1.1e-96 357.8 387 48.8
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.1e-96 357.8 397 50.9
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.4e-96 357.5 389 50.9
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.8e-96 357.1 374 53.2
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 6.8e-96 355.1 394 48.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 6.8e-96 355.1 394 48.2
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 5.8e-95 352.1 384 50.3
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 9.9e-95 351.3 406 50.5
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 9.9e-95 351.3 395 50.4
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-94 350.9 406 50.7
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 1.3e-94 350.9 387 49.9
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.3e-94 350.9 395 49.6
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.9e-94 349.0 421 48.0
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 4.9e-94 349.0 421 48.0
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 6.4e-94 348.6 397 48.4
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.4e-93 347.4 393 49.1
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 4.6e-92 342.4 365 52.3
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.0e-91 341.3 389 49.1
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.3e-91 340.9 416 47.1
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 1.3e-91 340.9 415 47.5
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.3e-91 340.9 389 49.6
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 1.7e-91 340.5 384 49.2
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.7e-91 340.5 394 48.7
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 2.3e-91 340.1 395 48.6
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 6.6e-91 338.6 391 47.1
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 9.6e-90 334.7 361 49.6
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.6e-89 334.0 394 48.7
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 2.8e-89 333.2 357 49.9
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.6e-89 332.8 380 48.4
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.2e-89 332.0 387 47.5
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 1.4e-88 330.9 392 46.4
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 5.8e-87 325.5 374 47.3
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 5.8e-87 325.5 373 48.0
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.2e-86 323.6 368 49.7
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 2.4e-85 320.1 366 48.6
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 3.2e-85 319.7 394 47.0
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.1e-85 318.5 383 46.2
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 9.3e-85 318.2 383 46.2
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 9.3e-85 318.2 392 46.9
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.2e-84 317.8 402 46.0
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.2e-84 317.8 388 45.6
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.1e-82 311.2 398 44.7
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.5e-82 310.8 302 55.3
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 2.1e-81 307.0 366 49.2
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.8e-81 306.6 392 45.9
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.6e-81 306.2 392 45.9
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 6.2e-81 305.4 314 53.8
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 8.1e-81 305.1 407 44.2
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.1e-80 304.7 367 46.3
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.2e-79 301.2 395 45.3
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.5e-79 300.8 411 44.5
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 9.9e-79 298.1 396 44.4
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 2.2e-78 297.0 395 44.8
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 4.9e-78 295.8 386 44.8
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 4.9e-78 295.8 386 44.8
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 6.4e-78 295.4 386 44.8
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.7e-76 290.0 300 54.7
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 3.5e-76 289.7 409 40.6
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.3e-75 287.7 386 44.8
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.1e-74 284.6 362 45.9
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.8e-72 277.3 379 44.1
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 1.3e-70 271.2 403 40.2
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.9e-70 269.2 412 37.1
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.1e-69 268.1 379 43.3
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.9e-69 267.3 305 50.8
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 3.2e-69 266.5 414 40.6
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 2.3e-67 260.4 156 84.0
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.0e-67 260.0 420 37.1
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 4.3e-66 256.1 391 39.9
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.4e-66 255.4 393 37.7
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.3e-65 254.6 191 67.5
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.3e-65 254.6 407 39.6
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 6.3e-65 252.3 424 35.1
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.0e-62 245.0 413 37.3
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 6.5e-62 242.3 397 38.5
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.3e-57 228.0 271 47.6
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 1.6e-57 227.6 414 34.8
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.4e-56 224.6 373 38.1
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.8e-56 224.2 384 36.2
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.8e-56 224.2 235 49.8
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 7.7e-55 218.8 345 42.6
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 5.0e-54 216.1 373 36.2
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.1e-53 214.9 360 36.4
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.4e-53 214.5 363 37.2
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.6e-52 209.9 252 47.6
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 3.0e-51 206.8 299 40.8
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-50 204.5 287 42.5
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.6e-47 193.7 182 53.8
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.7e-46 191.0 181 52.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.1e-37 161.8 202 44.1
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.1e-36 156.0 275 40.7
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.4e-32 144.8 247 42.1
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 2.9e-30 137.1 343 30.9
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 7.2e-29 132.5 101 63.4
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.7e-28 129.8 146 49.3
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.7e-23 114.0 187 39.6
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.3e-17 92.4 299 28.1
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 8.3e-17 92.4 111 43.2
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 2.9e-14 84.0 120 40.8
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.9e-13 81.3 145 34.5
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.8e-12 77.4 56 62.5
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 1.0e-11 75.5 72 51.4
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 5.9e-07 59.7 63 52.4
Cre16.g675900 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D145447 8.6e-06 55.8 110 28.2


User provided reference genes

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