Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0223121 Rosa chinensis HOM05D007402 ORTHO05D003673 4.6e-100 367.9 179 100.0
RcHm_v2.0_Chr5g0060431 Rosa chinensis HOM05D007402 ORTHO05D003673 9.2e-93 343.6 178 93.8
FvH4_3g33090 Fragaria vesca HOM05D007402 ORTHO05D003673 1.4e-85 319.7 178 87.6
MD11G1131200 Malus domestica HOM05D007402 ORTHO05D003673 1.2e-52 210.3 142 73.2
MD03G1104000 Malus domestica HOM05D007402 ORTHO05D003673 1.1e-50 203.8 143 72.0
Prupe.6G095500 Prunus persica HOM05D007402 ORTHO05D003673 2.1e-44 183.0 117 76.9
Actinidia24081 Actinidia chinensis HOM05D007402 ORTHO05D003673 7.2e-37 157.9 138 59.4
PGR004G2397 Punica granatum HOM05D007402 ORTHO05D003673 4.7e-36 155.2 136 55.9
CANSAT54G0200 Cannabis sativa HOM05D007402 ORTHO05D003673 2.3e-35 152.9 181 49.7
CiPaw.14G078200 Carya illinoinensis HOM05D007402 ORTHO05D003673 5.1e-35 151.8 180 50.0
Rhsim13G0092700 Rhododendron simsii HOM05D007402 ORTHO05D003673 5.7e-34 148.3 132 59.1
MELO3C005032.2 Cucumis melo HOM05D007402 ORTHO05D003673 7.4e-34 147.9 159 54.1
Thecc.09G259500 Theobroma cacao HOM05D007402 ORTHO05D003673 1.3e-33 147.1 181 49.2
Cfa011358 Carpinus fangiana HOM05D007402 ORTHO05D003673 1.7e-33 146.7 132 61.4
Haze_23904 Corylus avellana HOM05D007402 ORTHO05D003673 1.7e-33 146.7 136 58.8
Duzib168G2154 Durio zibethinus HOM05D007402 ORTHO05D003673 1.7e-33 146.7 185 46.5
vmacro00255 Vaccinium macrocarpon HOM05D007402 ORTHO05D003673 6.3e-33 144.8 141 53.9
CsaV3_1G013010 Cucumis sativus L. HOM05D007402 ORTHO05D003673 1.1e-32 144.1 158 51.9
vmacro13688 Vaccinium macrocarpon HOM05D007402 ORTHO05D003673 1.4e-32 143.7 141 53.9
QL01p037328 Quercus lobata HOM05D007402 ORTHO05D003673 4.1e-32 142.1 99 70.7
Potri.018G093700 Populus trichocarpa HOM05D007402 ORTHO05D003673 5.3e-32 141.7 182 47.3
Dinv03604 Davidia involucrata HOM05D007402 ORTHO05D003673 9.1e-32 141.0 107 64.5
Glyma.12G071400 Glycine max HOM05D007402 ORTHO05D003673 3.5e-31 139.0 98 66.3
ClCG03G002330 Citrullus lanatus HOM05D007402 ORTHO05D003673 4.5e-31 138.7 140 56.4
Hma1.2p1_0071F.1_g038080 Hydrangea macrophylla HOM05D007402 ORTHO05D003673 4.5e-31 138.7 170 47.6
TAR623G1033 Trochodendron aralioides HOM05D007402 ORTHO05D003673 4.5e-31 138.7 184 44.6
Lj2P1035T18 Lonicera japonica HOM05D007402 ORTHO05D003673 1.0e-30 137.5 89 73.0
vmacro00259 Vaccinium macrocarpon HOM05D007402 ORTHO05D003673 1.3e-30 137.1 131 52.7
CSS0032254 Camellia sinensis var. sinensis HOM05D007402 ORTHO05D003673 1.7e-30 136.7 95 68.4
Gorai.004G012900 Gossypium raimondii HOM05D007402 ORTHO05D003673 1.7e-30 136.7 101 65.3
Gohir.D08G018400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 6.5e-30 134.8 95 68.4
Gohir.A08G008400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 1.1e-29 134.0 101 64.4
Lju470C2G3 Lonicera japonica HOM05D007402 ORTHO05D003673 1.5e-29 133.7 89 70.8
Sabra18G0080600 Salix brachista HOM05D007402 ORTHO05D003673 1.9e-29 133.3 164 46.3
SHI06049 Sapria himalayana HOM05D007402 ORTHO05D003673 2.5e-29 132.9 115 60.0
Sed0010667 Sechium edule HOM05D007402 ORTHO05D003673 2.5e-29 132.9 155 49.7
Atru.BG.118.p Acer truncatum HOM05D007402 ORTHO05D003673 3.2e-29 132.5 98 67.3
Phvul.011G073100 Phaseolus vulgaris HOM05D007402 ORTHO05D003673 3.2e-29 132.5 98 64.3
DCAR_018829 Daucus carota HOM05D007402 ORTHO05D003673 4.2e-29 132.1 99 63.6
Lalb_Chr19g0137401 Lupinus albus HOM05D007402 ORTHO05D003673 4.2e-29 132.1 175 43.4
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 7.2e-29 131.3 165 46.1
VMungo1127G1215 Vigna mungo HOM05D007402 ORTHO05D003673 1.6e-28 130.2 101 61.4
Lalb_Chr03g0027151 Lupinus albus HOM05D007402 ORTHO05D003673 2.1e-28 129.8 90 66.7
Nitab4.5_0000131g0200 Nicotiana tabacum HOM05D007402 ORTHO05D003673 2.1e-28 129.8 112 54.5
GSVIVG01025143001 Vitis vinifera HOM05D007402 ORTHO05D003673 2.1e-28 129.8 175 42.9
Nitab4.5_0005913g0040 Nicotiana tabacum HOM05D007402 ORTHO05D003673 2.7e-28 129.4 124 52.4
Psat7g223640 Pisum sativum HOM05D007402 ORTHO05D003673 2.7e-28 129.4 118 55.1
Lj3g0014788 Lotus japonicus HOM05D007402 ORTHO05D003673 8.0e-28 127.9 104 60.6
arahy.Tifrunner.gnm1.ann1.30WSHQ Arachis hypogaea HOM05D007402 ORTHO05D003673 1.0e-27 127.5 90 63.3
THA.LOC104800555 Tarenaya hassleriana HOM05D007402 ORTHO05D003673 1.4e-27 127.1 118 54.2
TWI75G1283 Tripterygium wilfordii HOM05D007402 ORTHO05D003673 1.4e-27 127.1 194 41.8
Psat7g224600 Pisum sativum HOM05D007402 ORTHO05D003673 1.8e-27 126.7 100 63.0
CARHR120500 Cardamine hirsuta HOM05D007402 ORTHO05D003673 2.3e-27 126.3 111 56.8
Ca_19244_v3 Cicer arietinum L. HOM05D007402 ORTHO05D003673 2.3e-27 126.3 95 66.3
SGA_v2.0_scaffold97G29181 Striga asiatica HOM05D007402 ORTHO05D003673 3.0e-27 125.9 95 64.2
TPR.G36407 Trifolium pratense HOM05D007402 ORTHO05D003673 3.9e-27 125.6 90 63.3
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 2.0e-26 123.2 99 60.6
Lsat_1_v5_gn_2_97841 Lactuca sativa HOM05D007402 ORTHO05D003673 2.0e-26 123.2 102 58.8
Carub.0004s0854 Capsella rubella HOM05D007402 ORTHO05D003673 2.6e-26 122.9 131 50.4
Migut.D02192 Erythranthe guttata HOM05D007402 ORTHO05D003673 7.4e-26 121.3 173 43.9
SalBow3G0099 Salvia bowleyana HOM05D007402 ORTHO05D003673 9.7e-26 120.9 95 64.2
Cc01_g11540 Coffea canephora HOM05D007402 ORTHO05D003673 1.7e-25 120.2 93 59.1
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.7e-25 120.2 88 64.8
Medtr4g060570 Medicago truncatula HOM05D007402 ORTHO05D003673 3.7e-25 119.0 100 58.0
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 4.8e-25 118.6 91 63.7
AL4G22480 Arabidopsis lyrata HOM05D007402 ORTHO05D003673 6.3e-25 118.2 116 50.9
HanXRQChr13g0419931 Helianthus annuus HOM05D007402 ORTHO05D003673 8.2e-25 117.9 130 48.5
PGSC0003DMG400009341 Solanum tuberosum HOM05D007402 ORTHO05D003673 1.4e-24 117.1 102 55.9
Solyc04g076370.4 Solanum lycopersicum HOM05D007402 ORTHO05D003673 2.4e-24 116.3 102 55.9
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 2.4e-24 116.3 102 55.9
Sp4g10640 Schrenkiella parvula HOM05D007402 ORTHO05D003673 3.1e-24 115.9 119 52.9
BolC4t23878H Brassica oleracea HOM05D007402 ORTHO05D003673 4.1e-24 115.5 89 62.9
BcaC02g10907 Brassica carinata HOM05D007402 ORTHO05D003673 5.3e-24 115.2 89 62.9
C04p23800 Brassica napus HOM05D007402 ORTHO05D003673 5.3e-24 115.2 89 62.9
AUR62034282 Chenopodium quinoa HOM05D007402 ORTHO05D003673 5.3e-24 115.2 94 57.4
BcaB02g10117 Brassica carinata HOM05D007402 ORTHO05D003673 1.6e-23 113.6 99 58.6
A07p18390 Brassica napus HOM05D007402 ORTHO05D003673 2.0e-23 113.2 145 44.8
AT2G27800 Arabidopsis thaliana HOM05D007402 ORTHO05D003673 2.6e-23 112.8 163 40.5
BraA07t29555Z Brassica rapa HOM05D007402 ORTHO05D003673 2.6e-23 112.8 145 44.8
CAN.G475.21 Capsicum annuum HOM05D007402 ORTHO05D003673 2.6e-23 112.8 102 54.9
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 4.5e-23 112.1 88 60.2
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 4.5e-23 112.1 157 42.7
Thhalv10016739m.g Eutrema salsugineum HOM05D007402 ORTHO05D003673 1.0e-22 110.9 106 51.9
AUR62029362 Chenopodium quinoa HOM05D007402 ORTHO05D003673 1.3e-22 110.5 86 59.3
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 1.1e-21 107.5 80 61.2
EL10Ac6g13413 Beta vulgaris HOM05D007402 ORTHO05D003673 2.5e-21 106.3 133 43.6
Hund16389 Selenicereus undatus HOM05D007402 ORTHO05D003673 3.2e-21 105.9 88 55.7
Aqoxy4G03220 Aquilegia oxysepala HOM05D007402 ORTHO05D003673 6.8e-19 98.2 161 39.1
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 1.7e-17 93.6 95 48.4
Nn7g37996 Nelumbo nucifera HOM05D007402 ORTHO05D003673 4.8e-17 92.0 54 74.1
ATR0068G034 Amborella trichopoda HOM05D007402 ORTHO05D003673 1.8e-16 90.1 89 49.4
MBI06_g43058_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 5.9e-15 85.1 112 40.2
MBI06_g23075_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 1.7e-14 83.6 124 39.5
Medtr2g018820 Medicago truncatula HOM05D007486 ORTHO05D003673 2.0e-07 60.1 67 37.3
Psat1g191400 Pisum sativum HOM05D007486 ORTHO05D003673 4.5e-07 58.9 67 38.8
MSTRG.16426 Avicennia marina HOM05D007830 ORTHO05D009947 7.7e-07 58.2 73 37.0
Cc01_g16440 Coffea canephora HOM05D007486 ORTHO05D003673 2.9e-06 56.2 72 34.7
Eucgr.H00752 Eucalyptus grandis HOM05D007486 ORTHO05D003673 2.9e-06 56.2 74 37.8
CiPaw.10G143400 Carya illinoinensis HOM05D006895 ORTHO05D008605 3.8e-06 55.8 58 43.1
TAR625G0208 Trochodendron aralioides HOM05D007486 ORTHO05D003673 8.6e-06 54.7 64 37.5


User provided reference genes

Program Settings