Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 2.4e-63 245.4 123 100.0
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 7.3e-49 197.2 143 76.2
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.3e-49 197.2 143 76.2
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.3e-49 197.2 143 76.2
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.3e-49 197.2 143 76.2
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.3e-49 197.2 143 76.2
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.1e-48 195.7 143 75.5
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 4.0e-47 191.4 134 77.6
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 8.4e-45 183.7 143 69.9
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.1e-43 179.1 143 68.5
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 2.7e-43 178.7 142 68.3
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.3e-42 176.4 142 67.6
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.3e-42 175.6 143 65.7
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 6.7e-42 174.1 143 65.7
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 8.7e-42 173.7 143 65.0
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.5e-41 172.9 143 65.7
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 1.5e-41 172.9 143 63.6
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.5e-41 172.9 143 65.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.9e-41 172.6 143 65.0
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.5e-41 172.2 143 65.0
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 4.3e-41 171.4 141 63.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.3e-41 171.4 143 63.6
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.3e-41 171.4 143 63.6
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 4.3e-41 171.4 143 63.6
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 5.6e-41 171.0 143 65.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 5.6e-41 171.0 143 64.3
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 7.4e-41 170.6 143 63.6
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 7.4e-41 170.6 143 65.0
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 9.6e-41 170.2 143 65.0
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 9.6e-41 170.2 143 65.0
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 9.6e-41 170.2 140 65.7
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 9.6e-41 170.2 143 64.3
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 9.6e-41 170.2 141 65.2
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 9.6e-41 170.2 143 63.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.3e-40 169.9 144 63.2
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.6e-40 169.5 143 62.9
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.1e-40 169.1 141 63.8
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 2.1e-40 169.1 141 63.8
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 2.8e-40 168.7 143 63.6
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.8e-40 168.7 143 64.3
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 2.8e-40 168.7 143 64.3
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 3.7e-40 168.3 142 62.7
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 3.7e-40 168.3 141 63.1
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 4.8e-40 167.9 143 62.2
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 4.8e-40 167.9 144 65.3
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 6.2e-40 167.5 143 63.6
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.2e-40 167.5 142 61.3
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 6.2e-40 167.5 142 62.0
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 6.2e-40 167.5 141 63.1
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 8.1e-40 167.2 143 63.6
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 8.1e-40 167.2 143 64.3
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.4e-39 166.4 143 62.2
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.4e-39 166.4 144 63.9
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.4e-39 166.4 144 63.9
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.4e-39 166.4 143 63.6
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.4e-39 166.4 143 62.9
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.8e-39 166.0 143 63.6
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 1.8e-39 166.0 143 62.9
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.4e-39 165.6 143 62.9
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.4e-39 165.6 143 61.5
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 3.1e-39 165.2 143 62.2
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 3.1e-39 165.2 143 62.2
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 3.1e-39 165.2 143 62.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 3.1e-39 165.2 143 62.9
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 4.0e-39 164.9 143 62.9
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 5.3e-39 164.5 141 62.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 5.3e-39 164.5 143 60.8
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.9e-39 164.1 143 62.2
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 6.9e-39 164.1 141 61.7
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 9.0e-39 163.7 144 63.2
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.2e-38 163.3 144 63.2
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.6e-38 162.2 144 63.2
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 2.6e-38 162.2 144 63.2
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.6e-38 162.2 142 61.3
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.4e-38 161.8 144 62.5
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 3.4e-38 161.8 144 62.5
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.4e-38 161.8 144 62.5
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 3.4e-38 161.8 144 62.5
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 4.5e-38 161.4 144 63.2
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 5.8e-38 161.0 144 62.5
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 5.8e-38 161.0 144 62.5
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 5.8e-38 161.0 144 62.5
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 5.8e-38 161.0 144 62.5
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 5.8e-38 161.0 144 62.5
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 7.6e-38 160.6 142 59.2
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.3e-37 159.8 144 62.5
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.3e-37 159.8 144 61.1
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.7e-37 159.5 143 60.8
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.7e-37 159.5 140 60.7
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 2.2e-37 159.1 131 63.4
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 2.2e-37 159.1 142 58.5
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.2e-37 159.1 142 60.6
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.9e-37 158.7 141 61.0
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 3.8e-37 158.3 142 60.6
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 4.9e-37 157.9 139 59.7
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 4.9e-37 157.9 143 60.1
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 6.4e-37 157.5 142 60.6
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 8.4e-37 157.1 142 59.9
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.4e-36 156.4 144 61.1
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 7.1e-36 154.1 143 58.7
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.2e-35 153.3 126 65.1
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.2e-35 153.3 126 65.1
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 2.1e-35 152.5 126 64.3
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 4.6e-35 151.4 140 57.9
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 5.1e-34 147.9 144 59.0
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 5.1e-34 147.9 174 51.1
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 8.7e-34 147.1 144 59.0
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 1.3e-29 133.3 69 94.2
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.2e-29 132.5 135 51.9
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 4.2e-28 128.3 138 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 7.1e-28 127.5 132 48.5
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.6e-27 126.3 146 50.0
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 2.1e-27 125.9 140 48.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 6.7e-26 120.9 146 50.0
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.3e-25 118.2 146 49.3
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 3.1e-23 112.1 134 42.5
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 5.3e-23 111.3 128 55.5
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 1.4e-18 96.7 128 38.3
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 8.8e-18 94.0 127 40.9
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 4.3e-17 91.7 129 41.9
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 2.8e-16 89.0 129 35.7
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.5e-14 83.2 50 80.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.4e-14 82.0 50 78.0
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.1e-09 67.0 60 48.3


User provided reference genes

Program Settings