Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.6e-76 289.3 138 100.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 6.3e-57 224.2 195 61.0
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 1.8e-56 222.6 195 60.5
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.2e-55 219.9 195 59.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.0e-55 219.2 195 59.5
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.5e-55 218.4 195 59.5
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 4.4e-50 201.4 135 68.9
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 3.7e-49 198.4 193 52.8
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 4.8e-49 198.0 193 53.4
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 6.3e-49 197.6 193 53.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 1.1e-48 196.8 193 52.8
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 1.8e-48 196.1 193 52.3
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 2.4e-48 195.7 193 53.9
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 4.1e-48 194.9 193 52.3
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 7.0e-48 194.1 193 53.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 1.6e-47 193.0 193 52.3
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 2.6e-47 192.2 194 51.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 2.6e-47 192.2 193 51.3
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 7.7e-47 190.7 193 50.8
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 1.0e-46 190.3 193 51.3
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 2.2e-46 189.1 192 52.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 3.8e-46 188.3 193 52.3
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 5.0e-46 188.0 193 51.3
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.1e-45 186.8 193 50.3
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.1e-45 186.8 193 52.3
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 1.9e-45 186.0 193 53.9
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 1.9e-45 186.0 192 51.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.5e-45 185.7 161 57.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.2e-45 185.3 193 50.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 3.2e-45 185.3 193 50.8
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 3.2e-45 185.3 194 50.5
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 3.2e-45 185.3 193 50.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 5.5e-45 184.5 193 49.7
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 7.2e-45 184.1 193 49.7
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 7.2e-45 184.1 193 49.2
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 9.4e-45 183.7 193 50.3
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 1.2e-44 183.3 191 50.3
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 1.2e-44 183.3 191 50.3
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.6e-44 183.0 193 50.3
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.6e-44 183.0 193 50.3
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 2.1e-44 182.6 144 60.4
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 2.1e-44 182.6 193 48.2
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 2.1e-44 182.6 193 49.2
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 2.7e-44 182.2 193 50.3
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 2.7e-44 182.2 193 49.7
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 3.6e-44 181.8 193 49.7
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 1.0e-43 180.3 193 49.7
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 1.4e-43 179.9 193 48.7
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 1.8e-43 179.5 193 50.3
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.8e-43 179.5 193 48.7
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 5.2e-43 177.9 193 48.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 5.2e-43 177.9 191 49.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 8.8e-43 177.2 193 48.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.2e-42 176.8 193 48.2
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.2e-42 176.8 193 47.7
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.5e-42 176.4 193 47.7
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 4.4e-42 174.9 193 48.7
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 4.4e-42 174.9 193 46.6
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 4.4e-42 174.9 193 48.7
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 7.5e-42 174.1 195 49.2
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 7.5e-42 174.1 193 47.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 7.5e-42 174.1 193 48.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 7.5e-42 174.1 193 47.7
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.5e-42 174.1 193 46.6
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.5e-42 174.1 193 46.6
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 7.5e-42 174.1 194 45.9
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 9.8e-42 173.7 193 47.2
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.3e-41 173.3 194 47.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 2.2e-41 172.6 189 49.2
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 2.2e-41 172.6 191 47.6
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 2.2e-41 172.6 192 47.9
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 3.7e-41 171.8 195 48.7
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 4.8e-41 171.4 192 46.9
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.3e-41 171.0 193 47.7
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 1.1e-40 170.2 192 46.4
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 1.1e-40 170.2 192 46.4
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.4e-40 169.1 193 47.7
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.2e-39 166.8 227 43.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.2e-39 166.8 194 45.4
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 1.6e-39 166.4 192 45.3
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 2.7e-39 165.6 193 46.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 4.5e-39 164.9 194 45.9
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 5.9e-39 164.5 193 45.1
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 5.9e-39 164.5 193 45.1
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.3e-38 163.3 174 48.3
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.7e-38 162.9 192 43.8
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.2e-38 162.5 194 45.4
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 2.9e-38 162.2 195 44.6
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 3.8e-38 161.8 194 45.4
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 3.8e-38 161.8 194 45.4
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 3.8e-38 161.8 194 44.8
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 5.0e-38 161.4 194 44.3
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 5.0e-38 161.4 194 44.8
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 6.5e-38 161.0 193 44.0
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 8.5e-38 160.6 194 44.8
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 8.5e-38 160.6 194 45.4
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.1e-37 160.2 194 44.8
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.1e-37 160.2 194 44.3
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.5e-37 159.8 193 44.6
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 1.5e-37 159.8 196 45.9
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.9e-37 159.5 194 44.8
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.5e-37 159.1 194 44.8
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 4.2e-37 158.3 194 44.3
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 4.2e-37 158.3 196 45.4
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.2e-37 157.5 194 43.8
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 9.4e-37 157.1 194 44.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.2e-36 156.8 194 44.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.6e-36 156.4 194 44.3
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 2.7e-36 155.6 194 43.8
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 3.6e-36 155.2 195 44.1
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 8.0e-36 154.1 194 43.3
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 8.0e-36 154.1 194 43.3
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.0e-35 153.7 194 43.3
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.8e-35 152.9 193 43.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.0e-35 151.8 187 42.8
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 5.2e-35 151.4 197 44.7
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.0e-34 149.4 194 42.8
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 4.4e-34 148.3 191 42.9
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.7e-33 146.4 196 43.9
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.8e-32 142.9 195 41.5
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 9.1e-32 140.6 210 38.6
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.6e-31 139.8 171 44.4
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 3.8e-30 135.2 166 45.2
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 3.8e-30 135.2 195 40.5
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.5e-29 131.3 97 66.0
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.2e-29 131.0 192 39.6
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 1.2e-28 130.2 96 66.7
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.6e-28 128.6 197 39.1
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.1e-28 127.9 195 36.9
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.8e-27 126.3 107 58.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.2e-26 123.6 187 40.6
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 4.4e-26 121.7 195 36.4
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 3.2e-24 115.5 194 36.1
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 5.4e-24 114.8 97 57.7
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 5.9e-23 111.3 193 37.3
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 8.6e-22 107.5 151 41.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.1e-21 107.1 79 64.6
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 6.1e-20 101.3 137 43.1
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 8.0e-20 100.9 93 51.6
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.6e-18 95.9 47 89.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-17 93.6 195 31.8
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-15 87.0 88 54.5
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 2.0e-15 86.3 45 80.0
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.1e-13 80.5 78 52.6
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 2.5e-13 79.3 107 44.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.3e-11 72.8 224 24.6


User provided reference genes

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