Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 9.6e-300 1032.7 521 100.0
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.9e-276 955.3 529 92.1
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-274 949.5 525 92.6
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.7e-272 942.2 556 87.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-271 938.7 546 89.0
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.4e-271 936.4 554 87.7
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 4.8e-251 870.9 522 85.6
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 3.5e-249 864.8 526 85.0
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.6e-238 829.3 518 81.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.8e-238 828.6 512 81.6
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 6.1e-238 827.4 519 79.2
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 8.0e-238 827.0 510 81.6
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.4e-236 821.6 518 81.3
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.7e-236 820.8 525 80.4
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 5.7e-236 820.8 504 81.3
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 9.8e-236 820.1 470 86.4
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.7e-235 819.3 461 87.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 4.9e-235 817.8 484 83.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 6.3e-235 817.4 525 80.4
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.3e-235 817.4 509 79.6
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 8.3e-235 817.0 457 88.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 2.4e-234 815.5 526 80.0
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.1e-234 815.1 492 82.3
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 5.4e-234 814.3 527 78.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 9.2e-234 813.5 519 80.0
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 9.2e-234 813.5 486 83.1
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.2e-233 813.1 513 79.1
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.6e-233 812.8 460 86.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.6e-233 812.8 528 79.5
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.5e-233 811.6 513 78.8
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.5e-233 811.2 529 77.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.5e-233 811.2 518 78.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.9e-233 810.8 513 78.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 5.9e-233 810.8 487 83.0
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.9e-233 810.8 473 84.6
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.3e-232 809.7 494 83.0
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.3e-232 809.7 461 86.1
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.3e-232 809.7 529 77.3
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.7e-232 809.3 507 79.5
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 2.3e-232 808.9 525 78.9
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 5.0e-232 807.7 511 79.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.1e-231 806.6 543 75.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.5e-231 805.4 492 80.9
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.5e-231 805.4 527 78.2
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.5e-231 805.4 516 78.3
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 4.3e-231 804.7 498 80.3
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 5.6e-231 804.3 531 77.4
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 9.5e-231 803.5 503 79.5
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.1e-230 802.4 513 78.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.8e-230 802.0 537 76.7
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 8.0e-230 800.4 467 82.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.0e-229 800.0 516 77.7
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.8e-229 799.3 481 83.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.1e-229 798.5 487 80.1
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 6.8e-229 797.3 463 84.4
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.5e-228 796.2 511 77.7
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.0e-228 795.8 491 79.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.6e-228 795.4 473 81.6
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.8e-228 794.3 459 84.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.3e-227 793.1 512 77.7
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.7e-227 792.7 525 76.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.2e-227 792.3 518 77.0
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 3.7e-227 791.6 467 82.7
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 8.3e-227 790.4 459 83.9
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.3e-227 790.4 463 83.6
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.1e-226 790.0 531 77.0
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-226 790.0 468 82.9
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.9e-226 789.3 529 75.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.4e-226 788.9 460 83.9
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.4e-226 787.7 464 83.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.7e-225 785.4 502 79.1
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 4.6e-225 784.6 459 83.4
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.7e-224 782.7 523 74.8
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.6e-224 780.8 510 77.3
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 8.6e-224 780.4 540 73.9
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.9e-223 779.2 498 78.3
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.6e-222 776.2 545 73.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.6e-222 776.2 500 76.2
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.6e-222 776.2 509 76.0
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.6e-222 775.0 504 75.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.2e-222 774.2 460 81.7
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-221 773.1 489 76.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.8e-221 772.7 508 74.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.3e-221 772.3 508 74.6
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.3e-221 772.3 502 75.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 4.0e-221 771.5 460 80.4
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 3.4e-220 768.5 465 80.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 7.5e-220 767.3 557 72.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 9.8e-220 766.9 511 77.5
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-219 766.5 502 74.7
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.9e-219 764.6 502 75.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 8.3e-219 763.8 556 70.3
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.4e-218 762.3 459 80.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.1e-217 759.2 460 79.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 7.8e-217 757.3 460 79.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.3e-216 755.7 509 74.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 8.1e-214 747.3 487 76.6
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.1e-213 746.9 521 72.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 4.0e-213 745.0 509 75.4
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.8e-213 744.2 465 80.4
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 7.5e-212 740.7 521 76.2
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.1e-210 734.9 467 75.4
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 4.1e-210 734.9 476 76.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.6e-209 731.5 513 73.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.5e-207 725.7 477 73.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.3e-207 725.3 470 73.8
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 4.4e-204 714.9 467 73.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.2e-203 712.6 459 76.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 7.1e-202 707.6 479 72.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.3e-200 702.6 418 82.1
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.6e-199 698.0 416 81.2
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.7e-198 694.9 465 75.7
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.8e-197 693.0 484 72.1
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.7e-192 676.4 455 79.1
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.1e-192 674.9 508 68.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-191 673.7 450 78.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.6e-191 671.4 451 77.6
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.6e-190 668.7 371 87.3
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.6e-188 662.5 398 84.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.9e-187 658.3 371 85.7
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-185 653.7 454 71.6
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-185 653.3 510 68.2
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 3.3e-183 645.6 730 50.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.8e-182 642.5 453 67.3
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 5.6e-175 618.2 467 67.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.8e-174 615.9 456 70.0
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 6.9e-173 611.3 454 67.8
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.6e-161 573.5 387 77.0
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.3e-155 553.9 405 73.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.7e-119 432.2 346 65.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.1e-117 427.9 237 88.2
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 5.4e-117 425.6 271 79.7
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.5e-106 390.2 292 67.5
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 6.2e-97 359.0 458 42.1
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-96 358.2 250 74.4
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.9e-90 337.4 459 39.9
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.6e-89 334.3 489 37.6
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.0e-88 329.7 200 81.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 3.4e-79 300.1 230 66.1
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.1e-64 250.4 400 41.8
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 7.6e-63 245.7 131 90.1
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 4.2e-61 240.0 201 64.2
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 8.2e-57 225.7 167 68.3
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 7.6e-55 219.2 165 69.1
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 8.4e-54 215.7 196 59.2
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.7e-46 191.4 249 45.4
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.2e-46 191.0 123 69.9
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-44 184.5 132 64.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 4.6e-44 183.3 98 88.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.8e-43 181.4 378 31.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.4e-40 171.0 91 90.1
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.6e-39 167.5 119 70.6
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 5.7e-34 149.8 80 88.8
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.4e-34 149.4 124 58.1
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 4.1e-32 143.7 93 79.6
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 6.5e-30 136.3 74 89.2
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.1e-28 131.3 290 30.3
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 4.0e-27 127.1 100 66.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 3.3e-26 124.0 100 64.0
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 7.7e-23 112.8 102 65.7
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-13 81.6 57 61.4
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.4e-11 75.5 41 80.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-10 72.4 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.5e-10 72.0 43 74.4
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 4.5e-07 60.5 38 76.3
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.7e-06 58.5 35 74.3
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 8.6e-06 56.2 286 26.9


User provided reference genes

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