Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0215721 Rosa chinensis HOM05D000222 ORTHO05D017589 4.7e-98 361.3 196 100.0
FAN18G1398 Fragaria x ananassa HOM05D000222 ORTHO05D017589 3.3e-51 205.7 149 76.5
FAN06G3302 Fragaria x ananassa HOM05D000222 ORTHO05D017589 2.4e-49 199.5 136 78.7
Prupe.3G201500 Prunus persica HOM05D000222 ORTHO05D003997 2.0e-48 196.4 201 60.7
FvH4_5g25480 Fragaria vesca HOM05D000222 ORTHO05D017589 4.4e-48 195.3 152 73.0
FAN13G3251 Fragaria x ananassa HOM05D000222 ORTHO05D017589 9.9e-48 194.1 128 82.0
FAN08G1811 Fragaria x ananassa HOM05D000222 ORTHO05D017589 1.7e-47 193.4 128 82.8
Cpa.g.sc136.23 Carica papaya HOM05D000222 ORTHO05D003997 1.6e-42 176.8 203 58.1
CiPaw.04G196200 Carya illinoinensis HOM05D000222 ORTHO05D003997 1.6e-42 176.8 201 55.7
TWI18G0788 Tripterygium wilfordii HOM05D000222 ORTHO05D003997 2.8e-42 176.0 203 56.7
Potri.014G164800 Populus trichocarpa HOM05D000222 ORTHO05D003997 4.8e-42 175.3 203 58.1
VMungo0540G0259 Vigna mungo HOM05D000222 ORTHO05D003997 6.2e-42 174.9 201 56.2
Potri.002G221500 Populus trichocarpa HOM05D000222 ORTHO05D003997 8.1e-42 174.5 203 57.6
TWI36G1024 Tripterygium wilfordii HOM05D000222 ORTHO05D003997 1.4e-41 173.7 203 56.7
Sabra14G0125500 Salix brachista HOM05D000222 ORTHO05D003997 4.0e-41 172.2 203 56.7
Phvul.006G012000 Phaseolus vulgaris HOM05D000222 ORTHO05D003997 1.2e-40 170.6 201 56.2
Glyma.20G059100 Glycine max HOM05D000222 ORTHO05D003997 1.5e-40 170.2 201 56.2
CARHR184180 Cardamine hirsuta HOM05D000222 ORTHO05D003997 2.0e-40 169.9 204 54.9
TWI75G1713 Tripterygium wilfordii HOM05D000222 ORTHO05D003997 2.0e-40 169.9 203 56.2
Sabra02G0169300 Salix brachista HOM05D000222 ORTHO05D003997 3.4e-40 169.1 200 55.5
CiPaw.03G278700 Carya illinoinensis HOM05D000222 ORTHO05D003997 5.8e-40 168.3 200 55.0
Glyma.13G025900 Glycine max HOM05D000222 ORTHO05D003997 1.7e-39 166.8 201 55.2
Manes.13G063900 Manihot esculenta HOM05D000222 ORTHO05D003997 1.7e-39 166.8 203 57.1
Thhalv10003897m.g Eutrema salsugineum HOM05D000222 ORTHO05D003997 2.2e-39 166.4 204 53.9
Manes.12G061500 Manihot esculenta HOM05D000222 ORTHO05D003997 2.9e-39 166.0 203 56.2
PGR042G0083 Punica granatum HOM05D000222 ORTHO05D003997 2.9e-39 166.0 202 56.4
Lj6g0017172 Lotus japonicus HOM05D000222 ORTHO05D003997 4.9e-39 165.2 206 53.9
Sp2g18560 Schrenkiella parvula HOM05D000222 ORTHO05D003997 3.2e-38 162.5 204 53.4
FvH4_7g06700 Fragaria vesca HOM05D000222 ORTHO05D017589 1.2e-37 160.6 108 78.7
MD17G1113100 Malus domestica HOM05D000222 ORTHO05D003997 1.6e-37 160.2 194 57.7
THA.LOC104826656 Tarenaya hassleriana HOM05D000222 ORTHO05D003997 4.6e-37 158.7 203 51.7
TAR629G0719 Trochodendron aralioides HOM05D000222 ORTHO05D003997 1.3e-36 157.1 205 52.2
Nn1g03230 Nelumbo nucifera HOM05D000222 ORTHO05D003997 3.0e-36 156.0 203 52.2
Duzib211G0478 Durio zibethinus HOM05D000222 ORTHO05D003997 3.9e-36 155.6 203 52.2
MBI19_g25587_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D003997 3.9e-36 155.6 205 52.2
BcaB04g19554 Brassica carinata HOM05D000222 ORTHO05D003997 5.1e-36 155.2 204 52.5
AL8G20820 Arabidopsis lyrata HOM05D000222 ORTHO05D003997 1.1e-35 154.1 204 53.4
Eucgr.A01043 Eucalyptus grandis HOM05D000222 ORTHO05D003997 1.1e-35 154.1 203 51.2
SHI10138 Sapria himalayana HOM05D000222 ORTHO05D003997 1.5e-35 153.7 195 52.3
CSS0029369 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 1.9e-35 153.3 204 51.5
Dinv05353 Davidia involucrata HOM05D000222 ORTHO05D000329 1.9e-35 153.3 205 52.2
TAR624G0367 Trochodendron aralioides HOM05D000222 ORTHO05D003997 1.9e-35 153.3 204 52.0
TAR626G0385 Trochodendron aralioides HOM05D000222 ORTHO05D003997 4.3e-35 152.1 193 53.4
Ciclev10014794m.g Citrus clementina HOM05D000222 ORTHO05D003997 7.4e-35 151.4 176 58.0
Aqoxy4G02226 Aquilegia oxysepala HOM05D000222 ORTHO05D003997 9.6e-35 151.0 204 52.0
CsaV3_7G002650 Cucumis sativus L. HOM05D000222 ORTHO05D003997 1.6e-34 150.2 195 54.4
Rhsim13G0143100 Rhododendron simsii HOM05D000222 ORTHO05D003997 2.1e-34 149.8 205 50.7
Gohir.D07G196800 Gossypium hirsutum HOM05D000222 ORTHO05D003997 6.2e-34 148.3 194 54.6
MBI16_g26374_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D003997 6.2e-34 148.3 205 51.2
Oeu030106.1 Olea europaea HOM05D000222 ORTHO05D003997 6.2e-34 148.3 204 49.0
Peaxi162Scf00576g00210 Petunia axillaris HOM05D000222 ORTHO05D003997 6.2e-34 148.3 192 52.6
Gorai.001G220500 Gossypium raimondii HOM05D000222 ORTHO05D003997 1.1e-33 147.5 194 54.1
Nitab4.5_0008857g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 1.4e-33 147.1 192 51.6
Dinv04410 Davidia involucrata HOM05D000222 ORTHO05D003997 1.8e-33 146.7 193 51.3
Gohir.A07G190500 Gossypium hirsutum HOM05D000222 ORTHO05D003997 2.4e-33 146.4 194 54.6
Hma1.2p1_0657F.1_g196950 Hydrangea macrophylla HOM05D000222 ORTHO05D003997 9.0e-33 144.4 193 49.7
Nitab4.5_0002478g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 2.0e-32 143.3 192 50.5
Oeu057039.1 Olea europaea HOM05D000222 ORTHO05D003997 2.0e-32 143.3 204 49.0
vmacro03628 Vaccinium macrocarpon HOM05D000222 ORTHO05D003997 2.0e-32 143.3 205 48.8
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 3.4e-32 142.5 193 52.3
Gohir.D07G092800 Gossypium hirsutum HOM05D000222 ORTHO05D003997 3.4e-32 142.5 194 51.5
Os12g0514400 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D003997 5.8e-32 141.7 210 49.5
MELO3C024108.2 Cucumis melo HOM05D000222 ORTHO05D003997 7.6e-32 141.4 197 50.3
Gorai.001G099400 Gossypium raimondii HOM05D000222 ORTHO05D003997 7.6e-32 141.4 194 52.1
A09p04330 Brassica napus HOM05D000222 ORTHO05D003997 9.9e-32 141.0 205 49.3
Migut.M01425 Erythranthe guttata HOM05D000222 ORTHO05D003997 1.7e-31 140.2 193 48.7
DCAR_002231 Daucus carota HOM05D000222 ORTHO05D003997 2.9e-31 139.4 195 48.2
C09p04640 Brassica napus HOM05D000222 ORTHO05D003997 3.8e-31 139.0 206 49.0
Gohir.A07G087900 Gossypium hirsutum HOM05D000222 ORTHO05D003997 3.8e-31 139.0 194 51.5
PSO541G2057 Papaver somniferum HOM05D000222 ORTHO05D003997 4.9e-31 138.7 192 47.9
PSO675G9062 Papaver somniferum HOM05D000222 ORTHO05D003997 4.9e-31 138.7 192 47.9
Rhsim02G0091500 Rhododendron simsii HOM05D000222 ORTHO05D003997 4.9e-31 138.7 192 51.0
DCAR_019236 Daucus carota HOM05D000222 ORTHO05D003997 6.4e-31 138.3 204 49.5
DCAR_030857 Daucus carota HOM05D000222 ORTHO05D003997 2.5e-30 136.3 195 48.2
Lj2A259T35 Lonicera japonica HOM05D000222 ORTHO05D003997 2.5e-30 136.3 199 48.2
Carub.0002s0065 Capsella rubella HOM05D000222 ORTHO05D003997 3.2e-30 136.0 206 50.5
Nn1g07460 Nelumbo nucifera HOM05D000222 ORTHO05D003997 4.2e-30 135.6 203 45.8
vmacro15741 Vaccinium macrocarpon HOM05D000222 ORTHO05D003997 9.3e-30 134.4 192 49.5
Sc21g0000720 Simmondsia chinensis HOM05D000222 ORTHO05D003997 1.2e-29 134.0 193 50.3
Lalb_Chr04g0247271 Lupinus albus HOM05D000222 ORTHO05D003997 2.7e-29 132.9 196 49.5
SGA_v2.0_scaffold7G03719 Striga asiatica HOM05D000222 ORTHO05D003997 3.5e-29 132.5 204 45.6
Cfa014242 Carpinus fangiana HOM05D000222 ORTHO05D003997 6.0e-29 131.7 201 50.2
Nitab4.5_0001774g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 1.0e-28 131.0 194 47.4
Lj1A1243G52 Lonicera japonica HOM05D000222 ORTHO05D003997 1.3e-28 130.6 178 47.8
MSTRG.13112 Avicennia marina HOM05D000222 ORTHO05D003997 1.8e-28 130.2 193 46.6
ECA248G0145 Erigeron canadensis HOM05D000222 ORTHO05D003997 3.0e-28 129.4 174 50.0
Hma1.2p1_1267F.1_g271520 Hydrangea macrophylla HOM05D000222 ORTHO05D003997 3.0e-28 129.4 167 50.9
Hma1.2p1_2614F.1_g325420 Hydrangea macrophylla HOM05D000222 ORTHO05D003997 3.9e-28 129.0 167 50.9
Peaxi162Scf00776g00115 Petunia axillaris HOM05D000222 ORTHO05D003997 3.9e-28 129.0 192 44.8
PGSC0003DMG400008456 Solanum tuberosum HOM05D000222 ORTHO05D003997 3.9e-28 129.0 192 47.4
Haze_12689 Corylus avellana HOM05D000222 ORTHO05D003997 5.1e-28 128.6 201 49.3
Migut.H01619 Erythranthe guttata HOM05D000222 ORTHO05D003997 8.7e-28 127.9 193 47.7
Sopen05g032660 Solanum pennellii HOM05D000222 ORTHO05D003997 1.5e-27 127.1 176 48.9
HanXRQChr01g0004781 Helianthus annuus HOM05D000222 ORTHO05D003997 1.9e-27 126.7 177 50.3
Solyc07g047780.3 Solanum lycopersicum HOM05D000222 ORTHO05D003997 2.5e-27 126.3 192 46.4
FAN05G0073 Fragaria x ananassa HOM05D000222 ORTHO05D003997 3.3e-27 125.9 201 49.8
FAN14G3541 Fragaria x ananassa HOM05D000222 ORTHO05D003997 4.3e-27 125.6 201 49.3
Nitab4.5_0001741g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 4.3e-27 125.6 194 45.4
AT5G48160 Arabidopsis thaliana HOM05D000222 ORTHO05D003997 5.6e-27 125.2 204 47.1
MSTRG.7148 Avicennia marina HOM05D000222 ORTHO05D003997 5.6e-27 125.2 193 46.1
Solyc05g054180.3 Solanum lycopersicum HOM05D000222 ORTHO05D003997 5.6e-27 125.2 176 47.7
unitig_32.g11054 Utricularia gibba HOM05D000222 ORTHO05D003997 5.6e-27 125.2 179 47.5
Sopen07g024220 Solanum pennellii HOM05D000222 ORTHO05D003997 7.4e-27 124.8 192 46.4
PGSC0003DMG400006146 Solanum tuberosum HOM05D000222 ORTHO05D003997 7.4e-27 124.8 192 46.9
CSS0026317 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 9.6e-27 124.4 171 50.9
FvH4_6g41110 Fragaria vesca HOM05D000222 ORTHO05D003997 9.6e-27 124.4 201 49.3
CDE10G0307 Ceratophyllum demersum HOM05D000222 ORTHO05D003997 1.6e-26 123.6 193 45.1
FAN09G0595 Fragaria x ananassa HOM05D000222 ORTHO05D003997 1.6e-26 123.6 201 49.8
HanXRQChr16g0516801 Helianthus annuus HOM05D000222 ORTHO05D003997 2.1e-26 123.2 182 46.2
Duzib138G0220 Durio zibethinus HOM05D000222 ORTHO05D003997 6.2e-26 121.7 199 48.7
unitig_748.g7914 Utricularia gibba HOM05D000222 ORTHO05D003997 8.2e-26 121.3 194 45.9
Hund11440 Selenicereus undatus HOM05D000222 ORTHO05D003997 1.8e-25 120.2 193 45.6
CAN.G1397.1 Capsicum annuum HOM05D000222 ORTHO05D003997 2.4e-25 119.8 194 46.4
MD09G1122100 Malus domestica HOM05D000222 ORTHO05D003997 4.0e-25 119.0 194 50.0
QL08p028660 Quercus lobata HOM05D000222 ORTHO05D003997 4.0e-25 119.0 201 47.8
Hund12532 Selenicereus undatus HOM05D000222 ORTHO05D003997 5.3e-25 118.6 204 44.1
PGSC0003DMG400018835 Solanum tuberosum HOM05D000222 ORTHO05D017589 1.5e-24 117.1 158 50.0
Lsat_1_v5_gn_0_32421 Lactuca sativa HOM05D000222 ORTHO05D003997 2.6e-24 116.3 195 43.1
CsaV3_7G023700 Cucumis sativus L. HOM05D000222 ORTHO05D003997 3.4e-24 115.9 195 45.6
EL10Ac9g22704 Beta vulgaris HOM05D000222 ORTHO05D003997 4.5e-24 115.5 172 49.4
Ca_06458_v3 Cicer arietinum L. HOM05D000222 ORTHO05D003997 4.5e-24 115.5 198 45.5
Ah.01g013870 Amaranthus hybridus HOM05D000222 ORTHO05D003997 5.8e-24 115.2 170 50.0
GSVIVG01030057001 Vitis vinifera HOM05D000222 ORTHO05D003997 7.6e-24 114.8 197 46.2
CAN.G449.25 Capsicum annuum HOM05D000222 ORTHO05D003997 3.8e-23 112.5 165 45.5
Glyma.14G007300 Glycine max HOM05D000222 ORTHO05D003997 3.8e-23 112.5 198 44.4
LjContig00081g0010659 Lotus japonicus HOM05D000222 ORTHO05D003997 6.5e-23 111.7 198 46.0
Medtr5g097360 Medicago truncatula HOM05D000222 ORTHO05D003997 6.5e-23 111.7 198 44.9
Zm00001eb115250 Zea mays HOM05D000222 ORTHO05D003997 6.5e-23 111.7 202 41.1
Zm00001eb248700 Zea mays HOM05D000222 ORTHO05D003997 6.5e-23 111.7 202 44.6
Lalb_Chr10g0107621 Lupinus albus HOM05D000222 ORTHO05D003997 1.1e-22 110.9 195 45.1
Glyma.02G305700 Glycine max HOM05D000222 ORTHO05D003997 1.4e-22 110.5 198 43.9
AUR62029084 Chenopodium quinoa HOM05D000222 ORTHO05D003997 2.5e-22 109.8 152 49.3
AUR62015028 Chenopodium quinoa HOM05D000222 ORTHO05D003997 3.2e-22 109.4 156 48.1
SMO337G0014 Selaginella moellendorffii HOM05D000222 ORTHO05D003997 7.1e-22 108.2 189 40.7
Dinv21274 Davidia involucrata HOM05D000222 ORTHO05D003997 9.3e-22 107.8 205 42.9
ClCG02G002720 Citrullus lanatus HOM05D000222 ORTHO05D003997 1.2e-21 107.5 195 45.1
Thecc.01G190800 Theobroma cacao HOM05D000222 ORTHO05D003997 2.1e-21 106.7 203 44.8
CSS0045294 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 4.6e-21 105.5 164 47.0
BolC5t34609H Brassica oleracea HOM05D000222 ORTHO05D003997 3.9e-20 102.4 166 46.4
COL.COLO4_08497 Corchorus olitorius HOM05D000222 ORTHO05D003997 6.7e-20 101.7 194 43.8
C05p59540 Brassica napus HOM05D000222 ORTHO05D003997 1.1e-19 100.9 166 46.4
THA.LOC104819039 Tarenaya hassleriana HOM05D000222 ORTHO05D003997 1.5e-19 100.5 203 42.9
CDE10G0723 Ceratophyllum demersum HOM05D000222 ORTHO05D003997 2.5e-19 99.8 170 47.1
MELO3C024207.2 Cucumis melo HOM05D000222 ORTHO05D003997 4.3e-19 99.0 195 43.6
Sed0005998 Sechium edule HOM05D000222 ORTHO05D003997 1.3e-18 97.4 197 43.1
CDE10G0248 Ceratophyllum demersum HOM05D000222 ORTHO05D003997 2.8e-18 96.3 169 45.6
RcHm_v2.0_Chr2g0156671 Rosa chinensis HOM05D000222 ORTHO05D003997 4.8e-18 95.5 201 42.8
Sed0001256 Sechium edule HOM05D000222 ORTHO05D003997 8.2e-18 94.7 176 43.8
TPR.G1263 Trifolium pratense HOM05D000222 ORTHO05D003997 1.4e-17 94.0 198 41.9
Nitab4.5_0010353g0020 Nicotiana tabacum HOM05D000222 ORTHO05D003997 6.9e-17 91.7 194 39.7
CANSAT64G1315 Cannabis sativa HOM05D000222 ORTHO05D003997 5.9e-16 88.6 201 40.8
Atru.chr6.3358 Acer truncatum HOM05D000222 ORTHO05D003997 1.7e-15 87.0 177 43.5
BcaC09g47946 Brassica carinata HOM05D000222 ORTHO05D003997 2.9e-15 86.3 193 38.9
BolC1t05533H Brassica oleracea HOM05D000222 ORTHO05D003997 2.9e-15 86.3 193 38.9
Actinidia02297 Actinidia chinensis HOM05D000222 ORTHO05D003997 8.5e-15 84.7 132 47.7
Pp3c20_20250 Physcomitrium patens HOM05D000222 ORTHO05D003997 1.1e-14 84.3 170 38.2
CSS0003549 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 1.9e-14 83.6 195 40.0
Phvul.008G285600 Phaseolus vulgaris HOM05D000222 ORTHO05D003997 2.5e-14 83.2 197 38.1
Lsat_1_v5_gn_6_61640 Lactuca sativa HOM05D000222 ORTHO05D003997 3.2e-14 82.8 101 52.5
Pp3c10_23730 Physcomitrium patens HOM05D000222 ORTHO05D003997 3.2e-14 82.8 173 36.4
AL3G19150 Arabidopsis lyrata HOM05D000222 ORTHO05D003997 1.2e-13 80.9 205 37.1
Thhalv10020400m.g Eutrema salsugineum HOM05D000222 ORTHO05D003997 1.2e-13 80.9 194 37.1
Carub.0003s0736 Capsella rubella HOM05D000222 ORTHO05D003997 2.1e-13 80.1 194 38.1
Aa31LG5G18350 Aethionema arabicum HOM05D000222 ORTHO05D003997 3.6e-13 79.3 193 37.8
BraA01t04363Z Brassica rapa HOM05D000222 ORTHO05D003997 4.6e-13 79.0 193 37.3
COL.COLO4_09801 Corchorus olitorius HOM05D000222 ORTHO05D003997 6.1e-13 78.6 139 42.4
VMungo0647G0556 Vigna mungo HOM05D000222 ORTHO05D003997 6.1e-13 78.6 203 37.9
AT3G07780 Arabidopsis thaliana HOM05D000222 ORTHO05D003997 7.9e-13 78.2 194 37.6
A05p40440 Brassica napus HOM05D000222 ORTHO05D003997 7.9e-13 78.2 166 42.2
CARHR082490 Cardamine hirsuta HOM05D000222 ORTHO05D003997 1.4e-12 77.4 194 37.6
ClCG02G009370 Citrullus lanatus HOM05D000222 ORTHO05D003997 1.8e-12 77.0 174 41.4
Sed0000297 Sechium edule HOM05D000222 ORTHO05D003997 2.3e-12 76.6 174 42.0
CsaV3_6G009470 Cucumis sativus L. HOM05D000222 ORTHO05D003997 1.5e-11 73.9 180 40.0
MELO3C025977.2 Cucumis melo HOM05D000222 ORTHO05D003997 3.3e-11 72.8 182 39.6
BcaB04g21269 Brassica carinata HOM05D000222 ORTHO05D003997 1.3e-10 70.9 166 39.2
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 1.3e-10 70.9 142 39.4
HPP92_021282 Vanilla planifolia HOM05D000222 ORTHO05D003997 1.7e-10 70.5 183 38.8
CBR_g30627 Chara braunii HOM05D000222 ORTHO05D003997 5.9e-08 62.0 155 34.8
Sopen05g019450 Solanum pennellii HOM05D000222 ORTHO05D003997 2.9e-07 59.7 147 36.7
BraA05t22777Z Brassica rapa HOM05D000222 ORTHO05D003997 5.0e-07 58.9 166 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2398 Anthoceros agrestis HOM05D000222 ORTHO05D003997 2.5e-06 56.6 115 35.7
SMO347G0638 Selaginella moellendorffii HOM05D000222 ORTHO05D003997 3.2e-06 56.2 113 36.3
CBR_g20305 Chara braunii HOM05D000222 ORTHO05D003997 4.2e-06 55.8 157 30.6


User provided reference genes

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