Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 5.2e-122 441.0 220 100.0
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.8e-91 338.2 189 90.5
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.8e-91 338.2 189 90.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.6e-89 330.9 185 89.7
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.9e-76 289.7 218 69.3
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 6.7e-69 264.6 191 68.6
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 6.5e-64 248.1 249 55.8
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.4e-63 246.9 189 66.1
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 5.1e-61 238.4 160 72.5
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 8.8e-61 237.7 160 73.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 7.4e-60 234.6 165 70.9
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.3e-59 233.8 157 73.2
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.3e-59 231.5 210 59.0
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.3e-59 231.5 210 59.0
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 6.3e-59 231.5 190 63.7
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.8e-58 229.9 210 59.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.8e-58 229.9 210 59.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.1e-58 229.2 159 71.7
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.5e-57 226.9 154 72.1
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 2.0e-57 226.5 159 68.6
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.0e-57 226.5 175 67.4
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.3e-56 223.8 154 72.7
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.9e-56 222.6 160 70.0
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 4.2e-55 218.8 160 66.9
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 6.1e-54 214.9 164 64.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 6.1e-54 214.9 164 64.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 1.0e-53 214.2 160 68.1
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 1.4e-53 213.8 161 67.7
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 5.2e-53 211.8 149 70.5
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.1e-52 210.7 190 60.0
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.5e-52 210.3 160 66.9
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 7.4e-52 208.0 159 64.8
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.7e-51 206.8 158 69.0
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.7e-51 206.8 183 60.7
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 2.2e-51 206.5 159 64.2
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.8e-51 206.1 160 67.5
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 8.2e-51 204.5 161 65.2
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.4e-50 203.8 161 65.8
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.4e-50 203.8 161 67.1
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.4e-50 203.8 132 74.2
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 2.4e-50 203.0 160 64.4
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.1e-50 202.6 131 74.0
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 7.0e-50 201.4 212 54.7
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 7.0e-50 201.4 158 63.9
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.2e-49 200.7 131 73.3
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.0e-49 199.9 161 63.4
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 2.0e-49 199.9 161 64.0
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.0e-49 199.9 157 63.7
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 2.6e-49 199.5 161 64.6
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 3.5e-49 199.1 128 73.4
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 4.5e-49 198.7 161 62.7
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 5.9e-49 198.4 222 51.4
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.0e-48 197.6 160 63.8
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.0e-48 197.6 160 61.9
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.7e-48 196.8 161 61.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.2e-48 196.4 165 61.8
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 6.5e-48 194.9 166 61.4
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.5e-48 194.9 159 62.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 6.5e-48 194.9 160 64.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 6.5e-48 194.9 160 64.4
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 6.5e-48 194.9 160 64.4
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 8.5e-48 194.5 159 60.4
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.5e-48 194.5 161 62.1
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.1e-47 194.1 200 53.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.1e-47 194.1 181 54.1
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.5e-47 193.7 161 61.5
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.5e-47 193.7 180 56.7
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.9e-47 193.4 161 61.5
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.9e-47 193.4 159 60.4
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 9.4e-47 191.0 160 56.9
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.2e-46 190.7 161 59.6
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.2e-46 190.7 213 51.2
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.6e-46 190.3 160 58.1
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.6e-46 190.3 160 56.9
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.1e-46 189.9 160 57.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.1e-46 189.9 161 60.9
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.1e-46 189.9 121 76.0
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.1e-46 189.9 192 53.6
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 2.7e-46 189.5 160 57.5
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.6e-46 189.1 160 57.5
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 3.6e-46 189.1 160 57.5
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.6e-46 189.1 160 57.5
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 3.0e-45 186.0 157 59.9
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 5.2e-45 185.3 193 50.8
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 2.0e-44 183.3 158 60.1
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 3.3e-44 182.6 162 61.7
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.7e-43 180.3 160 60.0
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 3.7e-43 179.1 160 60.6
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.1e-42 177.6 158 53.2
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.8e-42 176.8 160 60.0
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.1e-42 175.6 150 58.0
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.3e-42 175.3 160 59.4
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 3.5e-41 172.6 143 65.7
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 3.5e-41 172.6 197 51.3
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-40 171.0 169 55.0
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.9e-40 169.5 156 55.8
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 8.5e-40 167.9 166 54.2
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 8.5e-40 167.9 166 54.2
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 3.6e-38 162.5 130 65.4
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 1.0e-37 161.0 160 54.4
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.4e-37 160.6 136 61.8
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 7.5e-36 154.8 123 65.9
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 9.8e-36 154.5 123 64.2
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.8e-35 152.9 139 60.4
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.6e-33 147.1 121 61.2
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.7e-33 146.4 110 66.4
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 3.5e-33 146.0 151 54.3
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.1e-31 141.0 162 48.8
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.8e-29 133.7 86 75.6
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 2.0e-28 130.2 93 67.7
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 2.6e-28 129.8 102 57.8
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 1.3e-27 127.5 104 57.7
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.1e-26 124.4 99 66.7
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.8e-26 123.6 142 52.1
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.0e-25 120.2 95 63.2
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 5.2e-21 105.5 80 57.5
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 8.9e-21 104.8 106 50.9
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 4.7e-14 82.4 92 51.1
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 4.7e-14 82.4 99 53.5
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 8.0e-14 81.6 99 48.5
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.4e-13 80.9 122 40.2
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.0e-13 79.3 68 57.4
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 4.9e-11 72.4 120 38.3
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 3.0e-08 63.2 46 56.5
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.5e-07 60.8 121 38.0
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 2.5e-07 60.1 63 47.6
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.5e-07 60.1 63 47.6
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 3.3e-07 59.7 63 47.6
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 1.2e-06 57.8 63 46.0


User provided reference genes

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