Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0210931 Rosa chinensis HOM05D000742 ORTHO05D000924 2.2e-70 268.9 139 100.0
RcHm_v2.0_Chr5g0076531 Rosa chinensis HOM05D000742 ORTHO05D345660 1.2e-42 176.8 139 73.4
RcHm_v2.0_Chr6g0266381 Rosa chinensis HOM05D000742 ORTHO05D344042 1.5e-37 159.8 87 95.4
RcHm_v2.0_Chr3g0496611 Rosa chinensis HOM05D000742 ORTHO05D000924 5.1e-30 134.8 123 66.7
FvH4_1g28380 Fragaria vesca HOM05D000742 ORTHO05D000924 7.3e-29 131.0 123 64.2
FAN19G2804 Fragaria x ananassa HOM05D000742 ORTHO05D000924 7.3e-29 131.0 123 64.2
FAN28G1687 Fragaria x ananassa HOM05D000742 ORTHO05D000924 7.3e-29 131.0 123 65.0
FAN26G2268 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.6e-28 129.8 123 64.2
RcHm_v2.0_Chr5g0046611 Rosa chinensis HOM05D000742 ORTHO05D000924 5.2e-27 124.8 123 64.2
Prupe.7G008000 Prunus persica HOM05D000742 ORTHO05D000924 4.6e-23 111.7 123 56.1
MD12G1007200 Malus domestica HOM05D000742 ORTHO05D000924 1.7e-22 109.8 123 57.7
Haze_20471 Corylus avellana HOM05D000742 ORTHO05D000924 6.6e-22 107.8 140 47.9
Lalb_Chr06g0174081 Lupinus albus HOM05D000742 ORTHO05D000924 8.6e-22 107.5 119 54.6
CsaV3_2G035910 Cucumis sativus L. HOM05D000742 ORTHO05D000924 5.6e-21 104.8 119 52.1
Potri.019G037600 Populus trichocarpa HOM05D000742 ORTHO05D000924 7.3e-21 104.4 123 52.0
Sc01g0005110 Simmondsia chinensis HOM05D000742 ORTHO05D000924 7.3e-21 104.4 117 53.8
QL07p018974 Quercus lobata HOM05D000742 ORTHO05D000924 1.6e-20 103.2 123 51.2
Phvul.004G050700 Phaseolus vulgaris HOM05D000742 ORTHO05D000924 2.1e-20 102.8 121 53.7
arahy.Tifrunner.gnm1.ann1.5X1K1M Arachis hypogaea HOM05D000742 ORTHO05D000924 2.8e-20 102.4 119 52.9
ClCG02G007840 Citrullus lanatus HOM05D000742 ORTHO05D000924 3.6e-20 102.1 119 51.3
GSVIVG01022464001 Vitis vinifera HOM05D000742 ORTHO05D000924 3.6e-20 102.1 119 53.8
Cc06_g07250 Coffea canephora HOM05D000742 ORTHO05D000924 4.7e-20 101.7 119 54.6
TWI32G0316 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 8.1e-20 100.9 119 48.7
CANSAT78G0310 Cannabis sativa HOM05D000742 ORTHO05D000924 1.1e-19 100.5 119 52.9
Dinv11926 Davidia involucrata HOM05D000742 ORTHO05D000924 1.1e-19 100.5 119 52.1
Lj1g0018194 Lotus japonicus HOM05D000742 ORTHO05D000924 1.4e-19 100.1 119 52.9
Manes.09G139000 Manihot esculenta HOM05D000742 ORTHO05D000924 1.4e-19 100.1 119 52.1
Psat3g087680 Pisum sativum HOM05D000742 ORTHO05D000924 1.4e-19 100.1 119 50.4
THA.LOC104821468 Tarenaya hassleriana HOM05D000742 ORTHO05D000924 1.4e-19 100.1 119 50.4
TPR.G31020 Trifolium pratense HOM05D000742 ORTHO05D000924 1.4e-19 100.1 121 52.1
Dinv25098 Davidia involucrata HOM05D000742 ORTHO05D000924 2.4e-19 99.4 119 51.3
HanXRQChr14g0453111 Helianthus annuus HOM05D000742 ORTHO05D000924 2.4e-19 99.4 119 52.1
ClCG04G005420 Citrullus lanatus HOM05D000742 ORTHO05D000924 3.1e-19 99.0 119 50.4
Nn6g32410 Nelumbo nucifera HOM05D000742 ORTHO05D000924 3.1e-19 99.0 119 51.3
Glyma.19G114000 Glycine max HOM05D000742 ORTHO05D000924 5.2e-19 98.2 119 52.1
TAR633G2015 Trochodendron aralioides HOM05D000742 ORTHO05D000924 5.2e-19 98.2 119 51.3
Sabra19G0048900 Salix brachista HOM05D000742 ORTHO05D000924 8.9e-19 97.4 143 44.1
Medtr7g086080 Medicago truncatula HOM05D000742 ORTHO05D000924 1.2e-18 97.1 121 50.4
Phvul.001G113300 Phaseolus vulgaris HOM05D000742 ORTHO05D000924 1.2e-18 97.1 119 51.3
Potri.013G055100 Populus trichocarpa HOM05D000742 ORTHO05D000924 1.5e-18 96.7 123 48.8
VMungo1383G0416 Vigna mungo HOM05D000742 ORTHO05D000924 1.5e-18 96.7 119 50.4
MSTRG.5925 Avicennia marina HOM05D000742 ORTHO05D000924 2.0e-18 96.3 119 51.3
Gorai.007G259600 Gossypium raimondii HOM05D000742 ORTHO05D000924 2.0e-18 96.3 119 52.9
Migut.J00761 Erythranthe guttata HOM05D000742 ORTHO05D000924 2.6e-18 95.9 119 49.6
Glyma.16G038800 Glycine max HOM05D000742 ORTHO05D000924 2.6e-18 95.9 122 51.6
Gohir.A11G232900 Gossypium hirsutum HOM05D000742 ORTHO05D000924 3.4e-18 95.5 120 55.8
Lsat_1_v5_gn_2_103961 Lactuca sativa HOM05D000742 ORTHO05D000924 3.4e-18 95.5 119 51.3
Ca_08287_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 4.4e-18 95.1 119 50.4
CiPaw.10G126000 Carya illinoinensis HOM05D000742 ORTHO05D000924 5.8e-18 94.7 123 47.2
EL10Ac5g11766 Beta vulgaris HOM05D000742 ORTHO05D000924 7.6e-18 94.4 119 52.9
Atru.chr2.1408 Acer truncatum HOM05D000742 ORTHO05D000924 9.9e-18 94.0 119 52.9
AUR62036277 Chenopodium quinoa HOM05D000742 ORTHO05D000924 1.3e-17 93.6 119 51.3
Manes.08G146100 Manihot esculenta HOM05D000742 ORTHO05D000924 1.3e-17 93.6 119 49.6
Sabra13G0049600 Salix brachista HOM05D004225 ORTHO05D004728 1.3e-17 93.6 126 48.4
Thecc.05G246700 Theobroma cacao HOM05D000742 ORTHO05D000924 1.3e-17 93.6 119 48.7
COL.COLO4_32973 Corchorus olitorius HOM05D000742 ORTHO05D000924 2.2e-17 92.8 119 49.6
arahy.Tifrunner.gnm1.ann1.S0TND5 Arachis hypogaea HOM05D000742 ORTHO05D000924 3.8e-17 92.0 119 47.9
Gohir.D11G244100 Gossypium hirsutum HOM05D000742 ORTHO05D000924 3.8e-17 92.0 120 54.2
Sp3g31480 Schrenkiella parvula HOM05D000742 ORTHO05D000924 3.8e-17 92.0 120 49.2
Aa31LG9G18090 Aethionema arabicum HOM05D000742 ORTHO05D000924 4.9e-17 91.7 119 48.7
Nitab4.5_0002131g0050 Nicotiana tabacum HOM05D000742 ORTHO05D000924 4.9e-17 91.7 119 51.3
PGR042G1108 Punica granatum HOM05D000742 ORTHO05D000924 4.9e-17 91.7 119 51.3
TWI34G1045 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 4.9e-17 91.7 119 48.7
MSTRG.26563 Avicennia marina HOM05D000742 ORTHO05D000924 6.4e-17 91.3 119 48.7
AUR62039725 Chenopodium quinoa HOM05D000742 ORTHO05D000924 6.4e-17 91.3 119 49.6
HanXRQChr01g0026371 Helianthus annuus HOM05D000742 ORTHO05D000924 8.4e-17 90.9 119 47.9
Nitab4.5_0000123g0030 Nicotiana tabacum HOM05D000742 ORTHO05D000924 8.4e-17 90.9 119 52.1
Hund10816 Selenicereus undatus HOM05D000742 ORTHO05D000924 8.4e-17 90.9 128 46.9
Oeu029557.2 Olea europaea HOM05D000742 ORTHO05D000924 1.1e-16 90.5 117 50.4
Rhsim03G0054700 Rhododendron simsii HOM05D000742 ORTHO05D000924 2.4e-16 89.4 119 48.7
CSS0024312 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 3.2e-16 89.0 119 47.1
CARHR217120 Cardamine hirsuta HOM05D000742 ORTHO05D000924 3.2e-16 89.0 119 47.1
Sopen10g028580 Solanum pennellii HOM05D000742 ORTHO05D000924 3.2e-16 89.0 119 49.6
Duzib177G0782 Durio zibethinus HOM05D000742 ORTHO05D000924 4.2e-16 88.6 120 50.8
Lalb_Chr22g0358911 Lupinus albus HOM05D000742 ORTHO05D000924 4.2e-16 88.6 119 46.2
RcHm_v2.0_Chr1g0341411 Rosa chinensis HOM05D000742 ORTHO05D000924 4.2e-16 88.6 87 62.1
Solyc10g076890.3 Solanum lycopersicum HOM05D000742 ORTHO05D000924 4.2e-16 88.6 119 49.6
CSS0039542 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 5.4e-16 88.2 119 46.2
PGSC0003DMG402007209 Solanum tuberosum HOM05D000742 ORTHO05D000924 5.4e-16 88.2 119 49.6
RcHm_v2.0_Chr1g0313801 Rosa chinensis HOM05D000742 ORTHO05D000924 7.1e-16 87.8 87 60.9
AL7G43610 Arabidopsis lyrata HOM05D000742 ORTHO05D000924 1.2e-15 87.0 119 46.2
CSS0006716 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 1.2e-15 87.0 119 46.2
Thhalv10022812m.g Eutrema salsugineum HOM05D000742 ORTHO05D000924 1.2e-15 87.0 119 45.4
HanXRQChr07g0197121 Helianthus annuus HOM05D000742 ORTHO05D000924 1.2e-15 87.0 119 47.1
PSO384G2219 Papaver somniferum HOM05D000742 ORTHO05D000924 1.2e-15 87.0 120 48.3
unitig_27.g24736 Utricularia gibba HOM05D000742 ORTHO05D000924 1.2e-15 87.0 117 48.7
Oeu020208.2 Olea europaea HOM05D000742 ORTHO05D000924 1.6e-15 86.7 119 49.6
Carub.0007s3052 Capsella rubella HOM05D000742 ORTHO05D000924 2.1e-15 86.3 119 47.9
MELO3C024750.2 Cucumis melo HOM05D000742 ORTHO05D000924 2.1e-15 86.3 119 46.2
RcHm_v2.0_Chr1g0378871 Rosa chinensis HOM05D000742 ORTHO05D000924 2.1e-15 86.3 87 59.8
Actinidia03946 Actinidia chinensis HOM05D000742 ORTHO05D000924 2.7e-15 85.9 119 47.9
AT5G32450 Arabidopsis thaliana HOM05D000742 ORTHO05D000924 3.5e-15 85.5 119 45.4
Lsat_1_v5_gn_1_56260 Lactuca sativa HOM05D000742 ORTHO05D000924 3.5e-15 85.5 119 48.7
SGA_v2.0_scaffold31G12804 Striga asiatica HOM05D000742 ORTHO05D000924 3.5e-15 85.5 119 47.9
Duzib128G1872 Durio zibethinus HOM05D000742 ORTHO05D000924 4.6e-15 85.1 119 48.7
Sed0007997 Sechium edule HOM05D000742 ORTHO05D000924 6.0e-15 84.7 119 47.9
Ciclev10021716m.g Citrus clementina HOM05D000742 ORTHO05D000924 1.0e-14 84.0 119 47.9
Actinidia37792 Actinidia chinensis HOM05D000742 ORTHO05D000924 3.0e-14 82.4 119 46.2
ATR0697G118 Amborella trichopoda HOM05D000742 ORTHO05D000924 1.1e-13 80.5 119 42.0
ECA238G1035 Erigeron canadensis HOM05D000742 ORTHO05D000924 1.1e-13 80.5 119 45.4
DCAR_013477 Daucus carota HOM05D000742 ORTHO05D000924 1.5e-13 80.1 117 42.7
Peaxi162Scf00003g05369 Petunia axillaris HOM05D000742 ORTHO05D000924 1.9e-13 79.7 119 47.9
Aqoxy1G00552 Aquilegia oxysepala HOM05D000742 ORTHO05D000924 2.5e-13 79.3 119 45.4
BcaC06g36363 Brassica carinata HOM05D000742 ORTHO05D000924 5.6e-13 78.2 119 43.7
CsaV3_4G012160 Cucumis sativus L. HOM05D000742 ORTHO05D000924 5.6e-13 78.2 119 44.5
BcaB03g16591 Brassica carinata HOM05D000742 ORTHO05D000924 7.3e-13 77.8 119 43.7
A07p02590 Brassica napus HOM05D000742 ORTHO05D000924 7.3e-13 77.8 119 44.5
C07p04890 Brassica napus HOM05D000742 ORTHO05D000924 1.6e-12 76.6 119 44.5
BolC7t40890H Brassica oleracea HOM05D000742 ORTHO05D000924 1.6e-12 76.6 122 44.3
DCAR_016965 Daucus carota HOM05D000742 ORTHO05D000924 1.6e-12 76.6 117 44.4
BraA07t28058Z Brassica rapa HOM05D000742 ORTHO05D000924 2.1e-12 76.3 122 44.3
Lj2A418T69 Lonicera japonica HOM05D000742 ORTHO05D000924 8.1e-12 74.3 109 45.0
MBI05_g25766_MAGBIO Magnolia biondii HOM05D000742 ORTHO05D000924 1.1e-11 73.9 110 41.8
MELO3C008814.2 Cucumis melo HOM05D000742 ORTHO05D000924 1.8e-11 73.2 119 41.2
Zm00001eb214900 Zea mays HOM05D000742 ORTHO05D000924 5.3e-11 71.6 119 38.7
Os03g0748900 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 1.2e-10 70.5 119 38.7
HPP92_018636 Vanilla planifolia HOM05D000742 ORTHO05D000924 2.0e-10 69.7 119 37.8
CDE07G1794 Ceratophyllum demersum HOM05D000742 ORTHO05D000924 4.9e-09 65.1 119 37.0
vmacro07549 Vaccinium macrocarpon HOM05D000742 ORTHO05D000924 8.4e-09 64.3 87 49.4
CDE04G3087 Ceratophyllum demersum HOM05D000742 ORTHO05D000924 1.1e-08 63.9 117 37.6
Eucgr.A02974 Eucalyptus grandis HOM05D000742 ORTHO05D000924 2.1e-07 59.7 115 35.7
BcaB06g27051 Brassica carinata HOM05D000742 ORTHO05D000924 2.7e-07 59.3 108 38.0
BcaB02g07034 Brassica carinata HOM05D000742 ORTHO05D000924 3.5e-07 58.9 108 38.0
TAR374G1002 Trochodendron aralioides HOM05D000742 ORTHO05D000924 7.9e-07 57.8 119 37.0
PSO063G7077 Papaver somniferum HOM05D000742 ORTHO05D000924 1.7e-06 56.6 117 35.9
PSO782G0093 Papaver somniferum HOM05D000742 ORTHO05D000924 1.7e-06 56.6 117 35.9
Sc01g0007270 Simmondsia chinensis HOM05D000742 ORTHO05D000924 1.7e-06 56.6 108 38.0
arahy.Tifrunner.gnm1.ann1.BGND9H Arachis hypogaea HOM05D000742 ORTHO05D000924 3.0e-06 55.8 111 36.9
arahy.Tifrunner.gnm1.ann1.YQJ5CI Arachis hypogaea HOM05D000742 ORTHO05D000924 3.0e-06 55.8 111 36.9
Lalb_Chr05g0215831 Lupinus albus HOM05D000742 ORTHO05D000924 3.0e-06 55.8 115 34.8
Nn4g24464 Nelumbo nucifera HOM05D000742 ORTHO05D000924 3.0e-06 55.8 111 36.0
Aqoxy3G04060 Aquilegia oxysepala HOM05D000742 ORTHO05D000924 3.9e-06 55.5 113 35.4
CANSAT21G2445 Cannabis sativa HOM05D000742 ORTHO05D000924 3.9e-06 55.5 111 39.6
Migut.F00090 Erythranthe guttata HOM05D000742 ORTHO05D000924 3.9e-06 55.5 115 34.8
MD01G1236900 Malus domestica HOM05D000742 ORTHO05D000924 3.9e-06 55.5 108 39.8
Nn3g19410 Nelumbo nucifera HOM05D000742 ORTHO05D000924 3.9e-06 55.5 115 34.8
Prupe.5G029900 Prunus persica HOM05D000742 ORTHO05D000924 5.1e-06 55.1 115 37.4
THA.LOC104800243 Tarenaya hassleriana HOM05D000742 ORTHO05D000924 5.1e-06 55.1 42 64.3
THA.LOC104805993 Tarenaya hassleriana HOM05D000742 ORTHO05D000924 5.1e-06 55.1 42 64.3
TAR371G0249 Trochodendron aralioides HOM05D000742 ORTHO05D000924 5.1e-06 55.1 113 36.3
ATR0829G069 Amborella trichopoda HOM05D000742 ORTHO05D000924 8.7e-06 54.3 117 34.2
Dinv25245 Davidia involucrata HOM05D000742 ORTHO05D000924 8.7e-06 54.3 115 35.7


User provided reference genes

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