Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.4e-72 276.2 141 100.0
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 8.2e-36 154.1 127 66.1
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.5e-34 148.3 107 73.8
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.0e-33 147.1 99 78.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.0e-33 144.8 99 77.8
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 8.5e-33 144.1 99 77.8
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.4e-32 143.3 107 73.8
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.4e-32 143.3 107 72.9
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.7e-23 112.5 99 64.6
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 4.6e-23 111.7 99 58.6
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 7.9e-23 110.9 99 56.6
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.0e-22 110.5 101 56.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 5.1e-22 108.2 99 56.6
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 6.7e-22 107.8 110 57.3
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 8.8e-22 107.5 99 56.6
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.5e-21 106.7 99 56.6
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 4.4e-21 105.1 110 57.3
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 4.4e-21 105.1 99 54.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 4.4e-21 105.1 99 54.5
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 4.4e-21 105.1 99 54.5
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 5.7e-21 104.8 99 54.5
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 9.7e-21 104.0 99 54.5
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 9.7e-21 104.0 99 55.6
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.3e-20 103.6 99 53.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.3e-20 103.6 99 53.5
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.3e-20 103.6 99 54.5
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.2e-20 102.8 99 54.5
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 2.2e-20 102.8 99 53.5
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.2e-20 102.8 99 55.6
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 2.8e-20 102.4 99 53.5
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.8e-20 102.4 99 55.6
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.8e-20 102.4 99 54.5
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.7e-20 102.1 99 54.5
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.7e-20 102.1 99 55.6
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 3.7e-20 102.1 106 50.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.8e-20 101.7 115 47.8
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 6.3e-20 101.3 99 53.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 8.2e-20 100.9 99 52.5
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.1e-19 100.5 99 53.5
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-19 100.5 99 53.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.4e-19 100.1 99 54.5
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.8e-19 99.8 99 50.5
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.8e-19 99.8 99 52.5
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-19 99.8 74 73.0
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 52.5
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 52.5
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 52.5
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 52.5
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 52.5
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 52.5
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 53.5
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.4e-19 99.4 99 51.5
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 3.1e-19 99.0 99 52.5
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 3.1e-19 99.0 99 52.5
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 3.1e-19 99.0 99 52.5
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.1e-19 99.0 99 53.5
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.1e-19 98.6 104 49.0
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 5.3e-19 98.2 99 52.5
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 6.9e-19 97.8 99 54.5
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 9.1e-19 97.4 99 50.5
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 9.1e-19 97.4 99 51.5
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.2e-18 97.1 102 52.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.2e-18 97.1 99 50.5
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.2e-18 97.1 99 50.5
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.5e-18 96.7 99 52.5
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.5e-18 96.7 99 50.5
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.5e-18 96.7 99 51.5
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.0e-18 96.3 99 51.5
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 2.0e-18 96.3 99 52.5
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 3.4e-18 95.5 99 49.5
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 4.5e-18 95.1 99 51.5
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 4.5e-18 95.1 92 53.3
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 4.5e-18 95.1 99 51.5
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 5.9e-18 94.7 99 49.5
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 7.7e-18 94.4 99 45.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.0e-17 94.0 99 52.5
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.7e-17 93.2 100 48.0
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.7e-17 93.2 99 52.5
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.7e-17 93.2 99 48.5
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.9e-17 92.4 99 48.5
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 5.0e-17 91.7 104 49.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 6.5e-17 91.3 99 51.5
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 6.5e-17 91.3 99 50.5
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 6.5e-17 91.3 99 48.5
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 8.5e-17 90.9 99 52.5
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.1e-16 90.5 99 47.5
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.9e-16 89.7 99 48.5
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 2.5e-16 89.4 99 50.5
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.5e-16 89.4 99 47.5
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.5e-16 89.4 99 51.5
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.2e-16 89.0 99 49.5
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 3.2e-16 89.0 99 49.5
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 3.2e-16 89.0 99 46.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 4.2e-16 88.6 99 48.5
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 5.5e-16 88.2 99 46.5
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 5.5e-16 88.2 99 47.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 7.2e-16 87.8 99 48.5
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 7.2e-16 87.8 99 47.5
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 9.4e-16 87.4 99 51.5
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 9.4e-16 87.4 99 46.5
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 9.4e-16 87.4 99 46.5
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 9.4e-16 87.4 99 46.5
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.1e-15 86.3 98 46.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.1e-15 86.3 99 48.5
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.7e-15 85.9 99 47.5
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 7.9e-15 84.3 99 45.5
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.0e-14 84.0 86 51.2
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.8e-14 83.2 99 46.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 3.0e-14 82.4 99 45.5
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.5e-13 80.1 89 48.3
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 2.6e-13 79.3 111 42.3
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 3.3e-13 79.0 87 47.1
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.7e-12 76.6 77 49.4
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 2.2e-12 76.3 99 42.4
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 6.3e-12 74.7 99 41.4
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.4e-11 72.8 79 48.1
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.1e-11 72.0 102 40.2
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.0e-11 71.2 73 53.4
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.0e-10 69.7 73 52.1
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.6e-10 69.3 84 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 2.2e-09 66.2 99 38.4
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 2.2e-09 66.2 47 63.8
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 3.8e-09 65.5 86 41.9
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 8.5e-09 64.3 47 63.8
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.5e-08 62.8 101 36.6
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 4.7e-07 58.5 99 35.4
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.8e-06 56.6 75 45.3


User provided reference genes

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