Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0206361 Rosa chinensis HOM05D001068 ORTHO05D020111 2.0e-71 272.3 140 100.0
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 1.8e-51 206.1 135 83.7
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 1.5e-50 203.0 135 81.5
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 1.5e-50 203.0 135 81.5
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 6.4e-49 197.6 135 80.0
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 1.3e-46 189.9 120 81.7
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 1.7e-46 189.5 120 82.5
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 9.9e-42 173.7 120 73.3
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 1.3e-41 173.3 120 74.2
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 2.2e-41 172.6 120 73.3
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 1.4e-40 169.9 120 74.2
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 1.9e-40 169.5 120 70.0
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 1.2e-39 166.8 120 73.3
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 1.6e-39 166.4 120 71.7
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 1.6e-39 166.4 120 71.7
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 2.7e-39 165.6 120 69.2
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 6.0e-39 164.5 120 71.7
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 1.0e-38 163.7 120 69.2
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 3.9e-38 161.8 120 67.5
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 5.1e-38 161.4 120 69.2
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 8.7e-38 160.6 120 67.5
GSVIVG01020650001 Vitis vinifera HOM05D001068 ORTHO05D002190 1.1e-37 160.2 120 70.0
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 1.5e-37 159.8 120 65.8
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 1.5e-37 159.8 120 67.5
RcHm_v2.0_Chr6g0266281 Rosa chinensis HOM05D001068 ORTHO05D020111 1.5e-37 159.8 84 97.6
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 1.9e-37 159.5 120 68.3
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 3.3e-37 158.7 120 65.8
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 3.3e-37 158.7 120 70.0
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 4.3e-37 158.3 120 70.0
Dinv02425 Davidia involucrata HOM05D001068 ORTHO05D002190 5.6e-37 157.9 121 68.6
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 5.6e-37 157.9 120 67.5
Gohir.D02G176600 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.3e-37 157.5 120 67.5
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.3e-37 157.5 120 67.5
Lsat_1_v5_gn_4_28520 Lactuca sativa HOM05D001068 ORTHO05D002190 7.3e-37 157.5 120 66.7
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 9.6e-37 157.1 120 65.8
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.6e-36 156.4 120 65.8
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 1.6e-36 156.4 120 68.3
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 2.1e-36 156.0 120 65.8
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 2.8e-36 155.6 120 65.8
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 8.1e-36 154.1 120 67.5
Dinv19990 Davidia involucrata HOM05D001068 ORTHO05D002190 1.1e-35 153.7 131 64.1
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 1.1e-35 153.7 120 65.0
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 1.4e-35 153.3 120 65.8
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 1.4e-35 153.3 120 69.2
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.8e-35 152.9 120 65.8
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.8e-35 152.9 120 65.0
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.8e-35 152.9 120 65.0
Oeu064840.1 Olea europaea HOM05D001068 ORTHO05D002190 1.8e-35 152.9 121 66.9
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 2.4e-35 152.5 120 68.3
ECA234G0082 Erigeron canadensis HOM05D001068 ORTHO05D002190 2.4e-35 152.5 120 66.7
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 2.4e-35 152.5 120 64.2
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 3.1e-35 152.1 120 63.3
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 3.1e-35 152.1 120 65.0
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 4.0e-35 151.8 120 67.5
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 4.0e-35 151.8 120 63.3
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 9.0e-35 150.6 120 64.2
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 9.0e-35 150.6 120 64.2
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 1.2e-34 150.2 120 64.2
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 1.2e-34 150.2 120 62.5
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.5e-34 149.8 120 62.5
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 1.5e-34 149.8 120 64.2
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 2.0e-34 149.4 120 66.7
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 2.6e-34 149.1 120 63.3
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 2.6e-34 149.1 120 61.7
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 2.6e-34 149.1 130 62.3
Sed0014357 Sechium edule HOM05D001068 ORTHO05D002190 3.4e-34 148.7 122 62.3
ECA236G4578 Erigeron canadensis HOM05D001068 ORTHO05D002190 4.5e-34 148.3 120 65.0
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 5.8e-34 147.9 120 60.8
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 7.6e-34 147.5 120 63.3
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 1.3e-33 146.7 120 62.5
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 1.3e-33 146.7 130 61.5
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 2.2e-33 146.0 120 62.5
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 2.2e-33 146.0 135 60.7
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 2.2e-33 146.0 120 65.0
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 2.2e-33 146.0 120 62.5
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 2.9e-33 145.6 130 60.8
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 3.8e-33 145.2 120 60.0
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 4.9e-33 144.8 120 60.0
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 4.9e-33 144.8 120 59.2
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 6.4e-33 144.4 121 60.3
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 8.4e-33 144.1 120 62.5
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 8.4e-33 144.1 120 61.7
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 1.1e-32 143.7 120 61.7
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 1.4e-32 143.3 120 60.0
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 1.4e-32 143.3 120 64.2
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 1.4e-32 143.3 120 60.8
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 3.2e-32 142.1 120 61.7
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 3.2e-32 142.1 120 61.7
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 3.2e-32 142.1 120 66.7
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 4.2e-32 141.7 122 59.8
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 5.4e-32 141.4 121 56.2
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 5.4e-32 141.4 120 61.7
DCAR_010695 Daucus carota HOM05D001068 ORTHO05D002190 1.2e-31 140.2 120 60.0
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 1.6e-31 139.8 120 58.3
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 1.6e-31 139.8 120 61.7
HanXRQChr16g0526381 Helianthus annuus HOM05D001068 ORTHO05D002190 1.6e-31 139.8 174 47.7
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 2.1e-31 139.4 120 59.2
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.7e-31 139.0 121 57.9
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 6.0e-31 137.9 120 58.3
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 6.0e-31 137.9 120 58.3
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 7.9e-31 137.5 121 56.2
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 7.9e-31 137.5 120 57.5
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 7.9e-31 137.5 113 62.8
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 1.0e-30 137.1 130 56.2
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 1.0e-30 137.1 120 60.8
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 1.3e-30 136.7 120 56.7
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 1.3e-30 136.7 120 60.8
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 1.8e-30 136.3 120 60.8
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 1.8e-30 136.3 120 56.7
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 1.8e-30 136.3 120 56.7
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 3.0e-30 135.6 120 55.8
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 5.1e-30 134.8 120 56.7
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 8.7e-30 134.0 121 56.2
BcaC05g24277 Brassica carinata HOM05D001068 ORTHO05D002190 8.7e-30 134.0 120 55.8
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 8.7e-30 134.0 121 56.2
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 8.7e-30 134.0 121 56.2
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 8.7e-30 134.0 120 59.2
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 2.5e-29 132.5 120 57.5
COL.COLO4_04705 Corchorus olitorius HOM05D001068 ORTHO05D002190 2.5e-29 132.5 120 60.0
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 3.3e-29 132.1 121 54.5
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 3.3e-29 132.1 121 54.5
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 5.6e-29 131.3 120 54.2
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 9.6e-29 130.6 120 55.8
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.3e-28 130.2 120 57.5
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 2.1e-28 129.4 120 56.7
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 3.1e-27 125.6 141 46.1
DCAR_021268 Daucus carota HOM05D001068 ORTHO05D002190 9.9e-26 120.6 121 56.2
MD09G1241500 Malus domestica HOM05D001068 ORTHO05D013681 2.1e-23 112.8 72 81.9
Sc06g0009140 Simmondsia chinensis HOM05D001068 ORTHO05D002190 2.7e-23 112.5 84 66.7
SEGI_21730 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.9e-23 110.9 112 53.6
SEGI_29810 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.9e-23 110.9 112 53.6
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 6.7e-22 107.8 120 50.8
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 1.1e-21 107.1 122 51.6
Eucgr.L03435 Eucalyptus grandis HOM05D001068 ORTHO05D013681 1.9e-21 106.3 83 60.2
SEGI_20994 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 4.3e-21 105.1 112 52.7
AT3G06690 Arabidopsis thaliana HOM05D001068 ORTHO05D013681 5.6e-21 104.8 93 55.9
Pp3c26_540 Physcomitrium patens HOM05D001068 ORTHO05D002190 1.1e-19 100.5 120 46.7
Pp3c13_22370 Physcomitrium patens HOM05D001068 ORTHO05D002190 2.4e-19 99.4 111 50.5
Atru.chr6.2845 Acer truncatum HOM05D001068 ORTHO05D002190 1.5e-18 96.7 64 70.3
VMungo1127G1678 Vigna mungo HOM05D001068 ORTHO05D002190 1.5e-18 96.7 120 45.0
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis HOM05D001068 ORTHO05D002190 2.0e-18 96.3 120 47.5
Mapoly0007s0119 Marchantia polymorpha HOM05D001068 ORTHO05D002190 2.0e-18 96.3 120 45.8
VMungo1127G1013 Vigna mungo HOM05D001068 ORTHO05D002190 1.0e-17 94.0 121 43.0
BcaC05g24286 Brassica carinata HOM05D001068 ORTHO05D002190 2.2e-17 92.8 78 57.7
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 3.8e-17 92.0 111 46.8
BcaC05g24280 Brassica carinata HOM05D001068 ORTHO05D002190 8.4e-17 90.9 128 45.3
GSVIVG01016325001 Vitis vinifera HOM05D001068 ORTHO05D020111 8.4e-17 90.9 72 65.3
GSVIVG01018579001 Vitis vinifera HOM05D001068 ORTHO05D020111 1.1e-16 90.5 72 65.3
GSVIVG01018581001 Vitis vinifera HOM05D001068 ORTHO05D020111 1.1e-16 90.5 72 65.3
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 2.5e-16 89.4 120 47.5
RcHm_v2.0_Chr1g0336421 Rosa chinensis HOM05D001068 ORTHO05D342963 2.5e-16 89.4 50 88.0
RcHm_v2.0_Chr7g0226181 Rosa chinensis HOM05D001068 ORTHO05D020111 1.8e-14 83.2 43 95.3
AUR62035387 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.3e-12 77.0 120 39.2
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 6.3e-12 74.7 120 38.3
Lsat_1_v5_gn_4_28480 Lactuca sativa HOM05D001068 ORTHO05D002190 4.1e-11 72.0 102 46.1
RcHm_v2.0_Chr2g0152681 Rosa chinensis HOM05D001068 ORTHO05D348853 4.5e-10 68.6 46 73.9
BcaC05g24278 Brassica carinata HOM05D001068 ORTHO05D020111 1.7e-09 66.6 65 52.3
BcaB02g06788 Brassica carinata HOM05D001068 ORTHO05D002190 4.2e-08 62.0 106 34.0
BcaC05g24284 Brassica carinata HOM05D001068 ORTHO05D002190 1.6e-07 60.1 73 47.9
HanXRQChr16g0526411 Helianthus annuus HOM05D001068 ORTHO05D013681 1.8e-06 56.6 34 79.4
AUR62032968 Chenopodium quinoa HOM05D000208 ORTHO05D137962 5.1e-06 55.1 85 40.0


User provided reference genes

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