Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 4.1e-251 870.9 441 100.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.4e-237 824.7 441 94.8
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.8e-236 821.6 441 94.3
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.1e-235 817.8 441 94.1
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.3e-233 812.0 442 93.7
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.0e-225 786.6 441 89.6
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.3e-217 758.8 435 87.4
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 5.1e-217 757.7 435 87.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.2e-195 685.3 443 79.0
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.9e-193 678.3 435 78.6
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.4e-190 669.1 438 77.4
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 2.6e-189 665.6 435 76.8
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.3e-188 663.3 436 75.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.8e-188 661.8 435 76.3
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.1e-187 660.2 436 75.7
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 5.4e-187 657.9 435 76.3
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.0e-185 652.1 442 74.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.0e-185 652.1 435 76.3
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 3.9e-185 651.7 435 76.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.1e-184 650.2 433 76.4
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.5e-184 649.8 435 75.6
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 6.2e-183 644.4 435 75.4
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 4.0e-182 641.7 435 74.0
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 6.9e-182 641.0 435 74.0
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 9.9e-181 637.1 435 73.1
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.4e-179 633.3 433 74.1
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.4e-179 633.3 437 73.5
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.4e-179 633.3 435 72.2
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.2e-178 630.2 435 72.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.7e-178 629.0 456 71.5
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.0e-178 627.9 466 68.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.0e-177 627.1 437 73.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.0e-177 627.1 436 72.2
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.9e-176 622.9 435 71.3
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.3e-176 622.1 435 71.3
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 4.3e-176 621.7 436 72.9
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 7.4e-176 620.9 437 72.3
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 7.4e-176 620.9 437 72.3
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.6e-175 619.8 435 73.1
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.6e-175 619.8 435 73.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.6e-175 619.8 438 72.1
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.7e-175 618.6 437 72.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 3.7e-175 618.6 461 69.2
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 6.2e-175 617.8 436 70.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 8.2e-175 617.5 337 92.0
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.4e-174 615.9 436 72.7
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.4e-174 615.9 438 70.8
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 3.1e-174 615.5 455 68.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 4.0e-174 615.1 438 73.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 9.0e-174 614.0 454 68.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.0e-173 612.8 437 72.3
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 4.5e-173 611.7 438 69.4
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.2e-172 609.4 444 69.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.2e-172 609.4 436 70.0
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-171 607.1 446 70.2
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.2e-171 605.5 411 74.2
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.7e-170 602.4 449 68.6
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 3.3e-168 595.5 402 73.9
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 7.4e-168 594.3 437 68.4
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.4e-166 590.1 431 68.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.1e-166 589.0 437 68.4
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 9.0e-166 587.4 434 68.7
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.3e-164 583.6 436 67.4
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-162 577.0 393 74.6
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.4e-161 573.5 404 72.8
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 7.4e-160 567.8 433 65.6
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.3e-159 567.0 393 74.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.7e-159 566.6 443 66.8
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.1e-158 563.9 434 66.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.8e-158 563.1 440 66.6
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 5.9e-157 558.1 434 64.1
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 7.7e-157 557.8 433 64.7
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.5e-155 552.7 437 64.3
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 7.2e-155 551.2 454 60.8
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.4e-153 547.0 437 62.9
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.9e-153 545.4 432 63.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 5.1e-153 545.0 419 66.8
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.0e-152 543.1 451 61.4
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 3.3e-152 542.3 441 67.6
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 7.4e-152 541.2 445 62.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.7e-151 540.0 453 60.9
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.8e-151 539.3 457 60.6
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.7e-151 538.9 458 60.5
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 8.2e-151 537.7 437 63.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.3e-150 535.0 437 66.1
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.2e-149 533.9 429 65.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 6.5e-148 528.1 379 70.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.4e-147 526.9 454 60.6
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 3.2e-147 525.8 386 68.1
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.2e-147 525.8 454 60.6
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 4.2e-147 525.4 438 62.3
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.0e-146 521.2 395 67.8
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.0e-145 520.8 440 61.8
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.0e-145 520.8 384 67.4
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 2.0e-144 516.5 397 67.8
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 7.4e-144 514.6 397 67.5
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.3e-143 513.8 438 60.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.7e-143 513.5 319 80.3
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 8.2e-143 511.1 436 62.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.4e-142 510.4 436 62.6
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.0e-141 506.5 435 59.3
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.0e-141 506.5 385 67.5
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 6.5e-140 501.5 352 72.2
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.9e-139 500.0 344 74.1
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 2.1e-138 496.5 432 62.0
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.7e-138 496.1 437 62.5
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-136 490.7 307 77.9
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.6e-136 489.6 467 58.2
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.4e-136 488.8 422 59.0
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.5e-132 474.9 423 58.4
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 9.4e-131 471.1 299 78.3
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.3e-129 466.5 430 57.7
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.6e-128 463.0 419 58.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.4e-128 462.6 438 56.6
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 2.3e-124 449.9 423 56.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 6.3e-119 431.8 387 58.9
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.0e-117 426.8 444 54.1
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 7.8e-117 424.9 433 55.2
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.6e-116 421.8 355 61.4
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 5.2e-105 385.6 325 62.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-98 364.4 441 49.9
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 8.1e-98 361.7 283 65.7
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.9e-96 354.8 281 63.7
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 9.9e-96 354.8 287 63.1
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.2e-94 349.7 281 63.7
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.2e-93 347.8 281 63.0
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.9e-91 340.5 294 59.5
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 4.0e-89 332.8 354 50.8
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 8.9e-89 331.6 233 69.5
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.8e-87 326.2 281 60.5
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 3.9e-84 316.2 329 50.8
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 6.6e-76 288.9 157 94.9
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 8.1e-74 282.0 365 45.8
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.8e-73 280.8 177 81.9
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.0e-73 279.6 157 90.4
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.3e-73 279.3 156 90.4
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 5.8e-72 275.8 155 90.3
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 9.9e-72 275.0 162 79.0
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.1e-67 261.5 156 84.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.5e-67 261.2 145 89.7
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.3e-67 260.0 204 62.3
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 7.9e-61 238.8 282 48.2
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.0e-60 238.4 499 36.5
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.1e-59 235.0 141 83.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.4e-59 232.3 133 90.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.8e-58 229.6 184 66.3
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.5e-56 224.6 234 50.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 8.4e-55 218.8 182 62.6
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 5.5e-54 216.1 312 47.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.1e-49 201.8 132 83.3
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 5.3e-49 199.5 484 32.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.6e-48 197.2 154 61.7
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.3e-43 179.9 308 39.3
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.7e-42 177.9 178 58.4
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.8e-42 177.2 106 85.8
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.1e-41 175.3 99 91.9
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.0e-36 158.7 140 58.6
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 8.2e-34 149.1 120 64.2
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 5.5e-30 136.3 146 52.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.0e-23 115.5 68 88.2
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.2e-23 114.4 215 36.3
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.0e-21 105.9 98 54.1
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.2e-20 103.2 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.7e-18 97.1 56 91.1
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 5.0e-15 86.7 257 29.6
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 5.2e-12 76.6 57 64.9
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 1.2e-11 75.5 70 52.9
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 8.6e-07 59.3 50 56.0
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.1e-06 58.9 61 50.8


User provided reference genes

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