Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 0.0e+00 1914.4 970 100.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1730.7 970 90.9
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 0.0e+00 1728.8 970 91.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1707.6 977 89.7
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1667.5 1003 86.4
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 0.0e+00 1429.8 979 75.8
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 0.0e+00 1347.4 904 77.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 0.0e+00 1151.3 983 64.4
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1132.1 980 63.2
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 0.0e+00 1131.3 974 63.4
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1130.9 1009 61.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 0.0e+00 1121.3 982 62.5
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 0.0e+00 1075.1 983 60.0
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.3e-310 1068.9 977 59.8
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.8e-299 1032.7 975 58.8
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 4.0e-299 1031.6 978 57.4
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 4.0e-299 1031.6 976 58.5
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.2e-298 1030.0 950 59.6
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.7e-297 1025.0 982 57.7
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.6e-295 1019.6 978 58.4
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 6.6e-294 1014.2 982 56.6
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 4.3e-293 1011.5 985 57.2
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 5.6e-293 1011.1 901 61.4
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 9.5e-293 1010.4 983 57.0
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 4.0e-291 1005.0 981 57.3
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 6.8e-291 1004.2 980 56.0
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.0e-290 1002.7 983 56.3
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.0e-290 1002.7 985 57.0
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 3.4e-290 1001.9 948 57.2
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.9e-289 998.8 979 57.3
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 2.4e-288 995.7 983 57.3
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.4e-288 995.7 976 57.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 4.6e-287 991.5 974 56.3
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 6.0e-287 991.1 975 56.6
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-286 989.9 983 56.0
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.0e-286 988.8 979 56.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.0e-286 988.8 979 56.7
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 5.1e-286 988.0 951 57.7
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.5e-285 985.7 983 55.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.6e-284 983.0 982 55.7
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.6e-284 981.9 973 55.4
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 8.1e-284 980.7 981 55.0
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.8e-283 979.5 984 56.7
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.3e-283 979.2 1026 54.5
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 8.9e-283 977.2 963 55.6
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.5e-282 976.5 1069 52.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 2.9e-281 972.2 969 55.6
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.9e-281 972.2 974 55.1
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 7.1e-280 967.6 986 55.3
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 7.1e-280 967.6 986 55.3
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 9.2e-280 967.2 950 57.7
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.2e-279 966.8 846 61.7
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.6e-279 964.9 982 55.6
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 4.6e-279 964.9 948 57.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.7e-278 963.0 922 56.4
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 6.2e-276 954.5 965 54.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.0e-274 949.5 977 55.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 7.6e-274 947.6 978 55.4
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.9e-273 944.9 981 54.4
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 6.4e-273 944.5 823 60.5
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.1e-272 943.7 943 55.0
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 3.2e-272 942.2 975 53.7
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.2e-271 940.3 963 55.3
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.0e-270 935.6 983 54.3
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.5e-269 933.3 953 54.6
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.8e-268 929.1 977 55.2
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 8.1e-268 927.5 970 54.1
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.0e-266 922.9 953 53.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 4.2e-264 915.2 968 52.8
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 4.6e-263 911.8 967 52.5
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 4.6e-263 911.8 979 52.1
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 2.3e-262 909.4 1003 51.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.5e-261 906.7 967 53.7
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 5.8e-258 894.8 997 51.2
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.9e-257 892.5 970 51.5
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.9e-257 892.5 978 52.4
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.4e-256 890.2 969 52.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.2e-255 887.1 972 51.1
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.5e-253 880.2 983 52.0
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.6e-252 876.7 939 51.5
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.4e-251 873.6 891 53.6
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.2e-250 870.5 974 52.0
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 4.9e-249 865.1 951 51.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.0e-246 857.4 935 52.3
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 5.1e-246 855.1 966 51.7
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.1e-244 849.7 979 50.3
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 4.8e-244 848.6 951 51.2
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 4.1e-243 845.5 952 51.5
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 6.5e-241 838.2 969 50.1
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 4.2e-240 835.5 971 50.6
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 9.3e-240 834.3 971 50.2
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 6.1e-239 831.6 687 62.4
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.0e-230 804.3 935 49.2
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.3e-230 803.1 1009 47.6
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 8.8e-230 801.2 935 50.1
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.7e-229 798.5 1019 48.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 5.7e-229 798.5 661 61.6
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 7.4e-229 798.1 666 61.6
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 5.9e-226 788.5 805 54.4
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 4.1e-219 765.8 1000 46.8
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 8.0e-215 751.5 686 57.7
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 4.4e-213 745.7 731 56.0
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 4.8e-204 715.7 962 45.0
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.4e-203 713.4 517 72.5
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.7e-201 707.2 608 61.8
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.3e-198 696.8 956 46.0
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.8e-198 695.3 753 51.9
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 7.5e-197 691.8 775 49.9
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.0e-193 681.4 962 43.9
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.8e-193 679.5 863 47.7
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 4.9e-180 636.0 463 72.1
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.3e-174 617.1 449 69.9
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.3e-169 600.5 720 47.6
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.3e-166 590.5 895 41.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 2.9e-156 557.0 712 46.9
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.9e-155 554.3 581 51.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.7e-153 547.7 718 46.8
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 5.6e-152 542.7 858 41.1
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 8.1e-151 538.9 631 47.1
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.3e-148 531.6 955 39.0
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.1e-146 524.2 984 37.7
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 8.4e-140 502.3 760 42.5
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 8.2e-119 432.6 701 37.8
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 4.1e-118 430.3 280 81.8
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.2e-117 428.7 661 40.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 9.7e-112 409.1 284 72.2
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 6.3e-111 406.4 542 45.4
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.5e-99 368.6 475 44.4
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 3.4e-88 330.9 433 46.0
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.9e-79 300.4 210 74.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.7e-76 292.0 171 87.1
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.7e-71 275.4 249 60.6
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.7e-68 265.4 211 65.9
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 5.0e-68 263.8 250 58.4
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-64 252.7 175 74.3
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.0e-64 251.9 236 54.2
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.9e-48 196.4 136 74.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 9.9e-48 196.4 174 58.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 2.9e-47 194.9 155 64.5
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 2.1e-45 188.7 277 45.8
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 7.3e-43 180.3 312 38.5
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.2e-37 162.9 114 67.5
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.1e-33 149.8 646 26.0
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 6.9e-33 147.1 196 46.9
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 5.1e-28 131.0 304 34.5
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.9e-22 112.5 80 73.8
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 3.9e-20 104.8 327 30.0
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.4e-17 96.3 577 22.9
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 4.0e-17 94.7 108 45.4
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.9e-13 80.5 42 88.1
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.1e-09 70.1 49 65.3


User provided reference genes

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