Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 7.1e-156 553.9 282 100.0
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.7e-154 547.0 282 98.6
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.5e-153 545.4 282 97.9
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.3e-153 544.7 282 98.2
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.3e-145 518.1 277 95.3
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 3.6e-144 515.0 282 91.8
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 3.4e-142 508.4 282 90.1
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 2.2e-141 505.8 282 89.4
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.9e-140 502.7 282 87.9
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 3.2e-140 501.9 282 89.4
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 5.4e-140 501.1 282 88.7
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 7.1e-140 500.7 282 87.2
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 9.3e-140 500.4 282 86.5
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.6e-139 499.6 280 87.1
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.6e-139 499.6 282 87.2
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.6e-139 499.6 282 86.2
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.6e-139 499.6 282 86.2
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 4.6e-139 498.0 280 85.7
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 6.0e-139 497.7 282 85.8
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 6.0e-139 497.7 282 88.3
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.0e-138 496.9 282 85.1
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.8e-138 496.1 282 86.2
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 3.0e-138 495.4 282 85.5
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 3.9e-138 495.0 282 87.9
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 5.6e-137 491.1 282 85.5
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.3e-136 490.0 282 86.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.6e-136 489.6 282 83.7
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.6e-136 489.6 282 85.5
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.8e-136 488.8 282 85.1
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 3.7e-136 488.4 282 83.3
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 4.8e-136 488.0 282 84.0
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 1.1e-135 486.9 281 84.7
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.1e-135 486.9 282 85.5
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.4e-135 486.5 282 84.8
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.4e-135 486.5 281 84.7
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 6.9e-135 484.2 282 84.0
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 2.0e-134 482.6 282 84.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 7.6e-134 480.7 293 80.5
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 1.7e-133 479.6 282 81.6
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.7e-133 479.6 282 84.4
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 2.9e-133 478.8 282 82.3
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 4.9e-133 478.0 282 84.0
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 4.9e-133 478.0 282 81.6
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 8.4e-133 477.2 282 83.3
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.1e-132 476.9 282 82.3
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 1.1e-132 476.9 282 82.6
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.9e-132 476.1 282 82.6
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 4.2e-132 474.9 282 83.0
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 7.1e-132 474.2 282 81.6
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 7.1e-132 474.2 282 82.6
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.2e-131 473.4 282 82.3
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 2.1e-131 472.6 282 79.4
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.0e-131 471.1 284 82.0
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 6.0e-131 471.1 282 80.5
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.3e-130 469.2 282 80.9
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.0e-130 468.8 269 83.6
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 6.7e-130 467.6 282 81.9
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 3.3e-129 465.3 282 81.2
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 5.7e-129 464.5 282 81.2
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 7.4e-129 464.2 282 80.5
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 1.3e-128 463.4 282 80.9
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.7e-128 461.8 282 79.8
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 4.8e-128 461.5 282 79.8
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 4.8e-128 461.5 283 82.0
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 1.1e-127 460.3 282 86.9
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.1e-127 460.3 286 79.7
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 2.4e-127 459.1 282 78.7
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 2.4e-127 459.1 341 70.1
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 3.1e-127 458.8 290 79.3
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 4.0e-127 458.4 266 85.3
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 5.3e-127 458.0 283 80.2
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 9.0e-127 457.2 282 81.2
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 9.0e-127 457.2 288 78.5
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.4e-126 455.3 283 80.2
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 5.8e-126 454.5 283 80.6
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 5.8e-126 454.5 283 80.2
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 5.8e-126 454.5 285 82.5
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.8e-125 451.8 283 79.2
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.9e-124 449.5 282 77.0
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 2.5e-124 449.1 278 78.4
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 3.2e-124 448.7 316 72.2
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 7.1e-124 447.6 283 80.2
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 9.3e-124 447.2 283 79.5
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 9.3e-124 447.2 281 78.6
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.2e-123 446.8 286 79.7
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.6e-123 446.4 283 79.9
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 2.1e-123 446.0 282 76.2
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 2.1e-123 446.0 295 77.6
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 2.1e-123 446.0 266 83.5
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.7e-123 445.7 286 79.7
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 6.1e-123 444.5 282 77.7
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 7.9e-123 444.1 286 79.4
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 7.9e-123 444.1 286 79.4
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 7.9e-123 444.1 282 79.8
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 3.0e-122 442.2 266 80.5
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.3e-121 438.7 286 78.0
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 7.4e-121 437.6 282 78.0
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 7.4e-121 437.6 286 77.6
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 9.7e-121 437.2 266 80.1
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.3e-120 436.8 286 78.3
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 2.8e-120 435.6 286 78.3
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.8e-120 435.6 286 78.0
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.7e-120 435.3 279 76.3
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 4.8e-120 434.9 286 77.6
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 4.8e-120 434.9 267 80.9
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 6.3e-120 434.5 282 75.2
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 6.3e-120 434.5 282 79.4
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 8.2e-120 434.1 286 78.0
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 4.1e-119 431.8 313 70.3
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 6.9e-119 431.0 266 78.6
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.2e-118 430.3 286 77.3
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 5.9e-118 427.9 281 76.2
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.7e-117 426.4 325 67.7
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.7e-117 426.4 240 85.8
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.1e-116 423.7 272 79.0
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.4e-116 423.3 286 72.4
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 2.5e-116 422.5 283 74.6
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 3.2e-116 422.2 276 77.5
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 9.4e-116 420.6 213 98.6
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.2e-115 420.2 282 75.2
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 3.3e-113 412.1 282 70.6
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 3.3e-113 412.1 282 70.6
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 3.7e-112 408.7 272 77.2
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.4e-111 406.8 223 91.9
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.8e-111 406.4 282 74.5
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.8e-111 406.4 282 74.5
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.8e-111 406.4 286 69.9
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.5e-110 403.3 247 78.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.3e-109 400.2 250 80.0
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 8.5e-109 397.5 281 70.5
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.1e-108 397.1 306 66.0
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 5.5e-108 394.8 287 70.0
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 3.9e-106 388.7 231 81.0
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 5.1e-106 388.3 276 73.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 6.7e-106 387.9 282 72.7
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 7.0e-103 377.9 283 69.3
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 9.1e-103 377.5 341 61.6
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.0e-101 374.0 266 68.8
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 5.5e-100 368.2 283 63.3
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.6e-99 365.5 258 73.6
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 6.1e-99 364.8 213 81.2
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 9.7e-97 357.5 279 64.9
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.6e-91 340.1 267 62.9
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 1.4e-90 337.0 249 71.9
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 4.0e-82 308.9 281 61.6
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 7.0e-79 298.1 239 64.4
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 2.0e-78 296.6 284 56.3
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 7.5e-73 278.1 213 61.5
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.2e-66 255.4 282 58.5
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 6.8e-66 255.0 328 52.1
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 2.1e-54 216.9 173 60.7
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.7e-54 216.5 172 62.2
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 1.5e-52 210.7 172 63.4
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-51 207.6 211 60.2
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 6.2e-51 205.3 120 77.5
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 5.2e-50 202.2 269 47.2
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.4e-42 177.6 122 70.5
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.4e-39 166.8 301 44.2
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.2e-39 166.4 180 51.7
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 4.4e-33 146.0 275 43.3
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.3e-28 129.8 83 67.5
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 5.3e-26 122.5 220 33.6
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 9.9e-25 118.2 120 51.7
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.2e-24 117.1 175 44.0
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 6.0e-22 109.0 66 83.3
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.0e-21 108.2 94 59.6
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.0e-21 106.7 118 50.8
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-14 84.7 52 82.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-12 77.4 47 80.9
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.4e-07 61.2 49 65.3


User provided reference genes

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