Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1480.3 768 100.0
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1372.8 768 94.1
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1371.7 768 93.9
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1363.6 770 91.9
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1362.8 762 94.2
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1349.0 768 90.8
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1343.6 768 90.2
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 0.0e+00 1261.1 714 93.6
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1213.7 738 84.1
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1210.7 777 80.6
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1209.9 774 80.4
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1207.6 782 79.8
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1206.0 779 80.1
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1204.5 784 79.6
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1202.6 780 79.9
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1198.0 743 82.6
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1197.2 738 84.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1195.3 780 79.4
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1194.1 771 80.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1193.3 780 79.6
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1192.2 783 78.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1186.0 738 82.2
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1186.0 783 78.8
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1182.9 785 78.2
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1167.5 781 77.8
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1167.1 792 77.1
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1166.0 741 81.0
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1164.8 711 83.8
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1161.4 787 76.1
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1160.6 779 76.5
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1159.1 731 81.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1155.2 732 80.6
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1154.0 741 80.3
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1151.3 752 78.9
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 723 80.5
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 774 77.0
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1144.0 766 76.8
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1139.0 773 76.7
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1138.6 723 80.1
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1138.3 735 79.5
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1135.9 777 75.8
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1134.8 735 79.2
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1129.4 778 76.2
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1127.9 777 75.3
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1125.2 740 78.1
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1121.3 720 80.3
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1116.3 728 78.0
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1113.2 728 78.8
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1113.2 817 73.1
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1110.1 702 80.3
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1109.7 824 72.0
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1109.4 793 74.5
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1088.9 704 79.5
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 778 72.1
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1087.4 781 73.2
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1087.0 721 78.2
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1082.0 744 76.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1081.2 776 72.3
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1080.9 782 72.9
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1079.3 781 73.0
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 739 76.3
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1075.5 729 75.4
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 2.6e-311 1071.6 783 71.6
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 2.6e-311 1071.6 783 71.6
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 4.0e-310 1067.8 766 74.5
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 5.2e-310 1067.4 729 75.2
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 4.9e-308 1060.8 784 71.4
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 772 72.3
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.4e-307 1059.3 655 82.0
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 4.1e-307 1057.7 733 75.3
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 2.0e-306 1055.4 716 76.5
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 3.5e-306 1054.7 774 71.2
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 7.8e-306 1053.5 728 75.0
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 728 74.9
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.3e-305 1052.7 804 69.8
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.8e-305 1051.2 769 71.9
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 5.6e-304 1047.3 794 71.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 6.1e-303 1043.9 773 71.8
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 8.0e-303 1043.5 789 71.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 8.0e-303 1043.5 794 70.9
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.2e-301 1039.6 742 73.7
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 5.8e-301 1037.3 731 74.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 9.8e-301 1036.6 783 70.6
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.7e-300 1035.8 723 75.0
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.9e-300 1035.0 788 70.7
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 5.0e-297 1024.2 717 74.8
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.9e-296 1022.3 718 74.4
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 791 69.5
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 3.3e-296 1021.5 718 74.2
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 4.3e-296 1021.1 717 74.3
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.3e-294 1015.4 724 72.7
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.2e-290 1003.0 730 71.1
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 3.5e-290 1001.5 700 75.6
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.7e-289 999.2 731 70.6
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.8e-286 989.2 733 69.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 4.6e-282 974.5 737 69.6
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.8e-262 909.4 624 78.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 7.4e-248 860.9 575 75.8
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.3e-247 860.1 575 76.0
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 8.2e-239 830.9 752 58.2
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.1e-233 811.6 729 58.0
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.1e-232 810.4 722 57.6
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.2e-231 806.2 723 59.9
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.3e-225 786.2 541 68.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 5.1e-225 785.0 731 58.1
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 3.5e-213 745.7 531 67.0
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.2e-212 743.0 531 67.6
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.7e-199 699.1 536 64.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.2e-193 678.7 414 80.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 7.3e-179 631.7 403 79.2
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.7e-167 592.8 414 68.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.0e-148 531.6 343 78.1
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.1e-132 476.1 269 84.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 6.3e-106 389.4 697 36.6
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 2.3e-100 370.9 491 42.8
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 3.1e-97 360.5 624 41.2
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.3e-95 355.1 269 63.9
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 2.0e-91 341.3 278 65.1
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 9.8e-83 312.4 278 64.0
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.0e-71 274.2 693 31.0
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 6.6e-71 273.1 349 48.7
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.6e-40 172.2 99 78.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 7.3e-38 163.3 83 88.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 4.4e-35 154.1 134 62.7
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 8.7e-31 139.8 128 60.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-30 139.4 158 53.2
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 3.3e-22 111.3 54 87.0
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 7.4e-22 110.2 137 48.9
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.7e-18 99.0 122 45.1
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.5e-14 85.9 82 56.1
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.5e-11 75.9 74 60.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 4.2e-09 67.8 59 61.0
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.0e-07 61.6 80 46.2


User provided reference genes

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