Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 4.8e-51 204.1 99 100.0
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.5e-49 198.0 99 98.0
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.5e-49 198.0 99 98.0
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.5e-49 198.0 99 98.0
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 1.1e-39 166.4 98 82.7
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.4e-37 159.5 95 80.0
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 6.8e-37 157.1 98 77.6
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 1.2e-36 156.4 95 77.9
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.2e-36 156.4 98 75.5
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 2.0e-36 155.6 96 78.1
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 5.7e-36 154.1 93 75.3
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 5.7e-36 154.1 98 76.5
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 7.5e-36 153.7 96 75.0
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 1.3e-35 152.9 101 78.2
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 2.2e-35 152.1 95 76.8
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 4.9e-35 151.0 95 75.8
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 8.3e-35 150.2 95 78.9
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.1e-34 149.8 93 76.3
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 3.1e-34 148.3 98 72.4
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.4e-34 147.5 73 94.5
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 7.0e-34 147.1 95 75.8
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 9.2e-34 146.7 100 77.0
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 9.2e-34 146.7 89 78.7
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.6e-33 146.0 95 73.7
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 5.9e-33 144.1 95 73.7
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 5.9e-33 144.1 96 72.9
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 5.9e-33 144.1 88 79.5
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 7.8e-33 143.7 89 76.4
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 1.0e-32 143.3 95 73.7
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.3e-32 142.9 89 76.4
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 73.4
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 2.9e-32 141.7 95 72.6
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 5.0e-32 141.0 93 74.2
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 6.6e-32 140.6 95 72.6
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 8.6e-32 140.2 96 70.8
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 1.9e-31 139.0 93 73.1
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 1.9e-31 139.0 93 73.1
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.5e-31 138.7 98 68.4
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.5e-31 138.7 98 68.4
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.5e-31 138.7 95 72.6
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 3.3e-31 138.3 96 68.8
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 3.3e-31 138.3 98 68.4
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 4.3e-31 137.9 93 75.3
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.3e-31 137.9 95 70.5
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.3e-31 137.9 95 70.5
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 7.3e-31 137.1 95 70.5
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 7.3e-31 137.1 70 98.6
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 7.3e-31 137.1 98 70.4
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 9.5e-31 136.7 89 75.3
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 9.5e-31 136.7 88 73.9
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 1.6e-30 136.0 93 71.0
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 2.8e-30 135.2 98 70.4
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 3.6e-30 134.8 89 73.0
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 1.8e-29 132.5 95 69.5
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.8e-29 132.5 90 70.0
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.8e-29 132.5 95 70.5
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 1.8e-29 132.5 134 52.2
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 2.3e-29 132.1 95 70.5
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 3.0e-29 131.7 99 69.7
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 5.2e-29 131.0 98 68.4
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.2e-28 129.8 95 68.4
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.2e-28 129.8 95 68.4
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.2e-28 129.8 95 68.4
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.2e-28 129.8 95 68.4
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.2e-28 129.8 95 68.4
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 2.0e-28 129.0 98 66.3
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 3.4e-28 128.3 89 70.8
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 5.7e-28 127.5 98 64.3
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 7.5e-28 127.1 145 49.0
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 9.8e-28 126.7 98 65.3
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 1.7e-27 125.9 89 69.7
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 2.2e-27 125.6 99 67.7
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 2.9e-27 125.2 98 65.3
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 6.4e-27 124.0 98 64.3
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 6.4e-27 124.0 93 67.7
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 6.4e-27 124.0 93 64.5
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.4e-26 122.1 98 63.3
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 3.2e-26 121.7 81 74.1
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.2e-26 121.7 99 62.6
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 1.2e-25 119.8 100 63.0
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 2.7e-25 118.6 91 64.8
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 1.3e-24 116.3 85 65.9
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 1.7e-24 115.9 96 59.4
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 3.0e-24 115.2 98 65.3
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 8.6e-24 113.6 85 64.7
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.5e-23 112.8 71 76.1
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.5e-23 112.1 71 74.6
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.2e-22 109.8 71 78.9
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.6e-22 109.4 100 63.0
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 2.1e-22 109.0 166 43.4
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 4.0e-21 104.8 97 59.8
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 1.5e-20 102.8 96 59.4
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.2e-19 99.0 54 77.8
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 1.4e-18 96.3 94 57.4
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 9.2e-18 93.6 64 70.3
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 3.5e-17 91.7 49 79.6
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 3.5e-17 91.7 70 62.9
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.0e-16 90.1 66 72.7
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.7e-16 89.4 49 77.6
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.9e-16 88.2 54 74.1
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 3.9e-16 88.2 49 79.6
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 3.6e-14 81.6 70 64.3
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 6.6e-08 60.8 48 64.6
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 3.6e-06 55.1 40 72.5
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 4.7e-06 54.7 62 53.2
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 6.2e-06 54.3 33 69.7


User provided reference genes

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