Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 0.0e+00 1184.9 574 100.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 0.0e+00 1124.8 574 95.3
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 0.0e+00 1123.2 574 95.3
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 0.0e+00 1121.7 574 94.6
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 0.0e+00 1119.8 574 94.4
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 0.0e+00 1075.5 574 89.7
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.3e-310 1068.9 574 88.5
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.2e-297 1025.0 579 87.6
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 8.4e-297 1023.1 574 85.2
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.1e-296 1022.7 573 85.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 2.3e-294 1015.0 571 84.2
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 6.6e-294 1013.4 571 84.1
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 574 84.1
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 7.3e-293 1010.0 573 84.1
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 9.6e-293 1009.6 574 84.0
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 2.1e-292 1008.4 573 84.3
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 575 83.5
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 8.1e-292 1006.5 571 83.7
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.1e-291 1006.1 568 84.3
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 9.0e-291 1003.0 573 83.6
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 570 84.6
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.5e-290 1002.3 574 83.6
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.5e-290 1002.3 574 84.1
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.6e-290 1001.5 574 83.8
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.4e-290 1001.1 573 83.9
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 7.6e-290 1000.0 573 83.8
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.3e-289 999.2 575 83.5
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 2.2e-289 998.4 574 83.4
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 2.2e-289 998.4 573 83.6
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.9e-289 998.0 573 83.8
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 2.9e-289 998.0 573 83.8
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 3.8e-289 997.7 575 83.5
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 1.9e-288 995.3 551 86.2
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 3.2e-288 994.6 573 83.6
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.2e-288 994.2 552 85.1
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 5.4e-288 993.8 568 83.8
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 9.3e-288 993.0 574 82.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.6e-287 992.3 575 83.0
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 7.9e-287 989.9 551 85.3
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 7.9e-287 989.9 575 83.5
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.3e-286 989.2 573 82.2
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.0e-286 988.0 551 85.5
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.0e-286 988.0 557 84.4
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 6.7e-286 986.9 552 84.4
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.5e-285 985.7 606 79.9
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.9e-285 985.3 551 85.1
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 3.3e-285 984.6 552 84.8
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 7.4e-285 983.4 551 84.8
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 9.6e-285 983.0 572 82.5
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 2.1e-284 981.9 551 85.1
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 2.1e-284 981.9 551 84.8
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 2.1e-284 981.9 551 84.9
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.1e-284 981.9 573 81.8
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.7e-284 981.1 563 82.8
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 4.8e-284 980.7 578 81.8
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 4.8e-284 980.7 573 80.8
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.1e-283 979.5 552 84.2
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.8e-283 978.8 574 81.7
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 3.1e-283 978.0 563 82.6
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 5.3e-283 977.2 571 82.3
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 6.9e-283 976.9 551 84.6
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.2e-282 976.1 560 83.0
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 2.0e-282 975.3 556 83.3
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 2.0e-282 975.3 597 79.4
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.0e-281 973.0 551 84.0
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.0e-281 973.0 552 83.7
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.3e-281 972.6 552 83.7
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 8.4e-281 969.9 563 82.4
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.5e-280 968.4 574 80.8
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 3.0e-278 961.4 575 81.2
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.0e-278 961.4 575 81.2
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-277 959.1 576 80.9
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.5e-277 958.4 554 82.7
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 4.3e-277 957.6 563 80.3
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 7.4e-277 956.8 559 82.3
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 8.2e-276 953.4 551 82.0
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.4e-275 951.8 547 82.3
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.9e-275 950.3 552 82.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.0e-274 948.7 568 79.6
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 3.8e-273 944.5 547 82.3
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 3.2e-272 941.4 570 80.2
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 7.2e-272 940.3 568 78.7
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.2e-271 939.5 545 82.4
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 1.6e-271 939.1 551 81.9
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.8e-270 935.6 574 77.7
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 5.7e-269 930.6 552 79.5
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 7.4e-269 930.2 530 85.3
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.3e-268 929.5 560 79.1
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.6e-268 929.1 553 79.9
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 6.3e-268 927.2 573 77.5
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 8.2e-268 926.8 560 79.1
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 3.1e-267 924.9 554 79.8
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 4.1e-267 924.5 553 81.6
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 3.8e-265 917.9 574 78.6
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 4.6e-263 911.0 554 79.1
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 6.5e-257 890.6 573 76.8
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 6.1e-255 884.0 569 76.3
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.7e-252 874.8 557 75.2
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.4e-251 872.8 552 76.4
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.4e-251 872.1 547 74.8
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 2.5e-248 862.1 574 73.7
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.0e-247 857.1 542 76.0
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.0e-246 856.7 542 76.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 9.7e-245 850.1 548 74.3
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.8e-244 848.6 563 75.0
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.2e-242 843.2 564 74.5
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.3e-241 839.7 496 80.4
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 7.2e-240 833.9 558 71.9
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 8.8e-238 827.0 456 86.4
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 8.3e-236 820.5 564 71.3
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.2e-231 806.6 574 71.1
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 5.7e-229 797.7 551 70.6
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 9.8e-229 797.0 508 75.8
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 9.5e-224 780.4 559 67.6
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.0e-222 776.9 426 87.1
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.8e-222 776.2 425 87.3
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 4.9e-220 768.1 545 67.7
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-215 753.4 534 68.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.7e-210 735.7 569 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 6.8e-206 721.1 537 65.4
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-201 706.8 540 66.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-201 706.8 540 66.1
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 3.3e-200 702.2 616 61.5
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 4.3e-168 595.5 331 86.4
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.0e-165 586.6 335 82.7
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.1e-159 566.6 574 55.6
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.9e-148 529.6 293 86.0
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.4e-145 520.8 551 50.3
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 8.2e-135 485.0 311 77.2
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.3e-127 461.1 322 69.9
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 5.7e-120 435.6 358 63.7
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.6e-101 374.4 199 88.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.9e-86 324.3 505 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.4e-72 276.9 335 46.6
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 4.2e-70 270.0 187 68.4
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 4.6e-61 240.0 133 85.7
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.5e-59 235.0 140 80.7
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 5.5e-54 216.5 129 79.1
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.5e-53 213.8 137 74.5
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 9.6e-51 205.7 127 76.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 9.6e-51 205.7 127 76.4
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 6.9e-49 199.5 133 72.2
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.0e-47 195.7 120 75.8
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.0e-47 195.7 120 75.8
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.3e-47 195.3 110 79.1
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 7.1e-46 189.5 119 74.8
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 7.1e-46 189.5 119 74.8
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.8e-44 184.9 129 65.9
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.7e-44 183.0 119 73.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 2.9e-39 167.5 96 80.2
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.8e-34 150.2 76 88.2
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.1e-30 139.0 79 82.3
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 3.7e-26 124.0 118 53.4
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-23 115.2 86 66.3
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 8.5e-23 112.8 189 40.2
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 9.4e-22 109.4 61 83.6
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.7e-21 107.8 105 55.2
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.2e-18 98.2 63 74.6


User provided reference genes

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