Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0189401 Rosa chinensis HOM05D005705 ORTHO05D007152 2.0e-180 635.6 307 100.0
RcHm_v2.0_Chr7g0189351 Rosa chinensis HOM05D005705 ORTHO05D007152 3.7e-142 508.4 312 81.7
FAN18G0862 Fragaria x ananassa HOM05D005705 ORTHO05D007152 2.0e-140 502.7 323 78.9
FAN13G0195 Fragaria x ananassa HOM05D005705 ORTHO05D007152 7.7e-140 500.7 319 79.0
FAN08G2466 Fragaria x ananassa HOM05D005705 ORTHO05D007152 9.5e-138 493.8 326 77.9
FAN04G2238 Fragaria x ananassa HOM05D005705 ORTHO05D007152 1.6e-124 449.9 340 70.3
MD14G1151500 Malus domestica HOM05D005705 ORTHO05D007152 3.9e-115 418.7 311 67.5
Manes.06G123000 Manihot esculenta HOM05D005705 ORTHO05D007152 7.6e-111 404.4 311 65.0
Nn4g22220 Nelumbo nucifera HOM05D005705 ORTHO05D007152 2.9e-110 402.5 313 65.5
Prupe.5G146600 Prunus persica HOM05D005705 ORTHO05D007152 2.9e-110 402.5 308 66.6
MD06G1136700 Malus domestica HOM05D005705 ORTHO05D007152 1.4e-109 400.2 312 66.0
Atru.chr6.1874 Acer truncatum HOM05D005705 ORTHO05D007152 7.1e-109 397.9 312 64.7
CiPaw.11G003500 Carya illinoinensis HOM05D005705 ORTHO05D007152 3.9e-107 392.1 316 64.2
VMungo1309G0782 Vigna mungo HOM05D005705 ORTHO05D007152 1.1e-106 390.6 311 64.6
Ciclev10031733m.g Citrus clementina HOM05D005705 ORTHO05D007152 2.1e-105 386.3 312 65.1
Potri.015G101300 Populus trichocarpa HOM05D005705 ORTHO05D007152 3.6e-105 385.6 309 62.1
Dinv11204 Davidia involucrata HOM05D005705 ORTHO05D007152 4.7e-105 385.2 315 63.2
Phvul.009G162600 Phaseolus vulgaris HOM05D005705 ORTHO05D007152 6.2e-105 384.8 312 62.8
Sabra15G0121700 Salix brachista HOM05D005705 ORTHO05D007152 1.4e-104 383.6 310 61.6
Solyc03g097550.3 Solanum lycopersicum HOM05D005705 ORTHO05D007152 1.4e-104 383.6 313 64.2
Peaxi162Scf00516g00214 Petunia axillaris HOM05D005705 ORTHO05D007152 1.8e-104 383.3 315 64.8
CAN.G732.1 Capsicum annuum HOM05D005705 ORTHO05D007152 4.0e-104 382.1 313 63.3
Nitab4.5_0001332g0070 Nicotiana tabacum HOM05D005705 ORTHO05D007152 6.8e-104 381.3 314 64.3
Sopen03g028300 Solanum pennellii HOM05D005705 ORTHO05D007152 8.9e-104 380.9 313 63.6
Thecc.03G135500 Theobroma cacao HOM05D005705 ORTHO05D007152 1.2e-103 380.6 312 63.5
THA.LOC104811568 Tarenaya hassleriana HOM05D005705 ORTHO05D007152 2.0e-103 379.8 314 62.4
Medtr3g098940 Medicago truncatula HOM05D005705 ORTHO05D007152 2.6e-103 379.4 312 63.8
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 3.4e-103 379.0 315 62.2
GSVIVG01008591001 Vitis vinifera HOM05D005705 ORTHO05D007152 7.6e-103 377.9 313 62.3
Nitab4.5_0003383g0010 Nicotiana tabacum HOM05D005705 ORTHO05D007152 1.3e-102 377.1 325 63.4
Aqoxy3G01676 Aquilegia oxysepala HOM05D005705 ORTHO05D007152 1.1e-101 374.0 309 63.1
Gorai.003G119300 Gossypium raimondii HOM05D005705 ORTHO05D007152 1.4e-101 373.6 311 62.1
Lalb_Chr08g0237371 Lupinus albus HOM05D005705 ORTHO05D007152 1.9e-101 373.2 313 62.0
CsaV3_1G000320 Cucumis sativus L. HOM05D005705 ORTHO05D007152 2.4e-101 372.9 312 62.5
Lj1g0017194 Lotus japonicus HOM05D005705 ORTHO05D007152 3.2e-101 372.5 312 61.9
Psat5g053040 Pisum sativum HOM05D005705 ORTHO05D007152 3.2e-101 372.5 312 62.5
Gohir.D03G113100 Gossypium hirsutum HOM05D005705 ORTHO05D007152 5.4e-101 371.7 311 62.4
CANSAT80G2532 Cannabis sativa HOM05D005705 ORTHO05D007152 9.3e-101 370.9 311 63.3
Eucgr.K02692 Eucalyptus grandis HOM05D005705 ORTHO05D007152 2.7e-100 369.4 312 61.2
Glyma.06G167100 Glycine max HOM05D005705 ORTHO05D007152 1.7e-99 366.7 312 61.2
ClCG06G018130 Citrullus lanatus HOM05D005705 ORTHO05D007152 3.9e-99 365.5 311 61.7
Ca_16064_v3 Cicer arietinum L. HOM05D005705 ORTHO05D007152 8.7e-99 364.4 312 61.5
Sed0013194 Sechium edule HOM05D005705 ORTHO05D007152 1.9e-98 363.2 312 62.2
Eucgr.B00082 Eucalyptus grandis HOM05D005705 ORTHO05D007152 2.5e-98 362.8 306 61.4
TWI14G0152 Tripterygium wilfordii HOM05D005705 ORTHO05D007152 2.1e-97 359.8 312 58.7
Migut.D01284 Erythranthe guttata HOM05D005705 ORTHO05D007152 2.8e-97 359.4 312 60.3
Eucgr.F01610 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.1e-96 357.5 312 59.9
PSO017G1135 Papaver somniferum HOM05D005705 ORTHO05D007152 2.4e-96 356.3 311 59.8
CSS0038740 Camellia sinensis var. sinensis HOM05D005705 ORTHO05D007152 2.0e-95 353.2 340 57.1
arahy.Tifrunner.gnm1.ann1.5ZS0BP Arachis hypogaea HOM05D005705 ORTHO05D007152 2.6e-95 352.8 317 59.6
vmacro19145 Vaccinium macrocarpon HOM05D005705 ORTHO05D007152 8.4e-94 347.8 344 57.0
Eucgr.B00079 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.4e-93 347.1 284 63.0
PSO478G3581 Papaver somniferum HOM05D005705 ORTHO05D007152 4.2e-93 345.5 309 58.3
Hma1.2p1_0168F.1_g074310 Hydrangea macrophylla HOM05D005705 ORTHO05D007152 3.5e-92 342.4 282 64.5
Gohir.A03G053840 Gossypium hirsutum HOM05D005705 ORTHO05D007152 1.3e-91 340.5 313 58.5
arahy.Tifrunner.gnm1.ann1.U15GQW Arachis hypogaea HOM05D005705 ORTHO05D007152 2.3e-91 339.7 353 53.3
Lsat_1_v5_gn_1_32681 Lactuca sativa HOM05D005705 ORTHO05D007152 6.6e-91 338.2 311 58.2
PGR044G0296 Punica granatum HOM05D005705 ORTHO05D007152 1.1e-90 337.4 320 56.2
Rhsim08G0193700 Rhododendron simsii HOM05D005705 ORTHO05D007152 1.5e-90 337.0 282 62.8
BolC2t08194H Brassica oleracea HOM05D005705 ORTHO05D007152 1.9e-90 336.7 320 58.8
ECA247G0704 Erigeron canadensis HOM05D005705 ORTHO05D007152 1.9e-90 336.7 313 58.8
A03p16280 Brassica napus HOM05D005705 ORTHO05D007152 2.5e-90 336.3 319 57.7
A02p12470 Brassica napus HOM05D005705 ORTHO05D007152 3.3e-90 335.9 319 58.6
C03p19170 Brassica napus HOM05D005705 ORTHO05D007152 4.3e-90 335.5 319 58.0
BraA02t06310Z Brassica rapa HOM05D005705 ORTHO05D007152 4.3e-90 335.5 319 58.6
DCAR_026236 Daucus carota HOM05D005705 ORTHO05D007152 4.3e-90 335.5 311 57.6
Sp6g13350 Schrenkiella parvula HOM05D005705 ORTHO05D007152 4.3e-90 335.5 318 57.9
Thhalv10013761m.g Eutrema salsugineum HOM05D005705 ORTHO05D007152 5.6e-90 335.1 318 57.5
BcaC01g06077 Brassica carinata HOM05D005705 ORTHO05D007152 7.4e-90 334.7 318 58.2
C02p20570 Brassica napus HOM05D005705 ORTHO05D007152 9.6e-90 334.3 319 58.3
Zm00001eb241970 Zea mays HOM05D005705 ORTHO05D007152 1.6e-89 333.6 319 55.2
AL8G25400 Arabidopsis lyrata HOM05D005705 ORTHO05D007152 2.1e-89 333.2 318 58.5
BcaC03g14622 Brassica carinata HOM05D005705 ORTHO05D007152 2.8e-89 332.8 312 59.0
FvH4_5g08961 Fragaria vesca HOM05D005705 ORTHO05D007152 2.8e-89 332.8 201 82.6
AT5G51140 Arabidopsis thaliana HOM05D005705 ORTHO05D007152 3.6e-89 332.4 318 57.9
TPR.G35256 Trifolium pratense HOM05D005705 ORTHO05D007152 3.6e-89 332.4 307 58.3
BcaC01g06097 Brassica carinata HOM05D005705 ORTHO05D007152 6.2e-89 331.6 319 57.7
Sc22g0003610 Simmondsia chinensis HOM05D005705 ORTHO05D007152 8.1e-89 331.3 280 61.1
Nn4g22223 Nelumbo nucifera HOM05D005705 ORTHO05D007152 1.1e-88 330.9 307 57.3
Aa31LG3G7650 Aethionema arabicum HOM05D005705 ORTHO05D007152 1.4e-88 330.5 321 55.8
Carub.0008s1118 Capsella rubella HOM05D005705 ORTHO05D007152 9.0e-88 327.8 318 57.9
BolC3t14305H Brassica oleracea HOM05D005705 ORTHO05D007152 1.5e-87 327.0 320 57.5
CARHR256910 Cardamine hirsuta HOM05D005705 ORTHO05D007152 1.5e-87 327.0 318 57.2
BraA03t10919Z Brassica rapa HOM05D005705 ORTHO05D007152 4.5e-87 325.5 321 56.7
Actinidia18330 Actinidia chinensis HOM05D005705 ORTHO05D007152 9.9e-87 324.3 252 65.1
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 2.2e-86 323.2 319 55.8
QL10p001835 Quercus lobata HOM05D005705 ORTHO05D007152 2.2e-86 323.2 444 44.1
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 3.8e-86 322.4 306 56.5
HanXRQChr02g0034161 Helianthus annuus HOM05D005705 ORTHO05D007152 1.1e-85 320.9 313 55.0
TAR374G1739 Trochodendron aralioides HOM05D005705 ORTHO05D007152 3.2e-85 319.3 237 68.4
ECA247G2912 Erigeron canadensis HOM05D005705 ORTHO05D007152 3.5e-84 315.8 314 54.8
Lj5A92G46 Lonicera japonica HOM05D005705 ORTHO05D007152 2.5e-82 309.7 355 50.7
MELO3C026185.2 Cucumis melo HOM05D005705 ORTHO05D007152 5.3e-80 302.0 296 56.8
Eucgr.K02697 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.2e-79 300.8 307 54.7
Ah.11g046430 Amaranthus hybridus HOM05D005705 ORTHO05D007152 1.5e-79 300.4 348 48.3
MSTRG.4614 Avicennia marina HOM05D005705 ORTHO05D007152 1.7e-78 297.0 274 59.9
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 1.0e-75 287.7 203 70.0
Eucgr.K02689 Eucalyptus grandis HOM05D005705 ORTHO05D007152 3.0e-75 286.2 308 51.9
Haze_07188 Corylus avellana HOM05D005705 ORTHO05D007152 3.9e-75 285.8 294 53.7
Oeu061128.1 Olea europaea HOM05D005705 ORTHO05D007152 1.1e-74 284.3 363 46.6
AUR62034819 Chenopodium quinoa HOM05D005705 ORTHO05D007152 4.3e-74 282.3 304 50.3
SGA_v2.0_scaffold37G14637 Striga asiatica HOM05D005705 ORTHO05D007152 4.3e-74 282.3 305 51.5
AUR62029555 Chenopodium quinoa HOM05D005705 ORTHO05D007152 2.1e-73 280.0 304 50.7
Duzib084G0308 Durio zibethinus HOM05D005705 ORTHO05D007152 2.7e-68 263.1 312 47.8
PGR083G0448 Punica granatum HOM05D005705 ORTHO05D007152 7.4e-66 255.0 307 48.9
HPP92_015136 Vanilla planifolia HOM05D005705 ORTHO05D007152 1.2e-63 247.7 306 46.1
Mapoly0190s0007 Marchantia polymorpha HOM05D005705 ORTHO05D007152 1.0e-59 234.6 237 52.7
CDE02G4520 Ceratophyllum demersum HOM05D005705 ORTHO05D007152 6.7e-59 231.9 235 54.9
Hund10107 Selenicereus undatus HOM05D005705 ORTHO05D007152 8.8e-59 231.5 318 44.3
Pp3c10_5730 Physcomitrium patens HOM05D005705 ORTHO05D007152 9.1e-56 221.5 423 34.8
Gohir.A03G053960 Gossypium hirsutum HOM05D005705 ORTHO05D007152 2.0e-55 220.3 159 67.3
PGSC0003DMG400031733 Solanum tuberosum HOM05D005705 ORTHO05D007152 5.5e-53 212.2 157 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2453 Anthoceros agrestis HOM05D005705 ORTHO05D007152 1.1e-50 204.5 211 51.7
Cpa.g.sc4.149 Carica papaya HOM05D005705 ORTHO05D007152 3.3e-42 176.4 94 83.0
Gohir.D03G113075 Gossypium hirsutum HOM05D005705 ORTHO05D007152 1.9e-37 160.6 154 57.8
Pp3c10_5680 Physcomitrium patens HOM05D005705 ORTHO05D007152 8.8e-35 151.8 365 31.8
Os02g0512300 Oryza sativa ssp. japonica HOM05D005705 ORTHO05D007152 2.6e-34 150.2 87 77.0
CBR_g48327 Chara braunii HOM05D005705 ORTHO05D007152 3.8e-30 136.3 193 45.6
Haze_27069 Corylus avellana HOM05D005705 ORTHO05D007152 1.2e-28 131.3 215 38.1
Cre17.g702400 Chlamydomonas reinhardtii HOM05D005705 ORTHO05D007152 3.6e-28 129.8 249 37.3
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 3.0e-27 126.7 216 37.5
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 8.8e-27 125.2 348 31.3
Cpa.g.sc4.148 Carica papaya HOM05D005705 ORTHO05D007152 8.3e-25 118.6 86 68.6
MBI11_g13060_MAGBIO Magnolia biondii HOM05D005705 ORTHO05D007152 1.3e-22 111.3 63 81.0
arahy.Tifrunner.gnm1.ann1.N812UT Arachis hypogaea HOM05D005705 ORTHO05D007152 2.5e-21 107.1 192 37.5
arahy.Tifrunner.gnm1.ann1.MH3CCF Arachis hypogaea HOM05D001440 ORTHO05D007152 2.8e-20 103.6 67 71.6
arahy.Tifrunner.gnm1.ann1.5M4P4Y Arachis hypogaea HOM05D005705 ORTHO05D007152 1.4e-19 101.3 67 70.1
arahy.Tifrunner.gnm1.ann1.WM01PM Arachis hypogaea HOM05D001440 ORTHO05D013218 2.0e-18 97.4 65 72.3
arahy.Tifrunner.gnm1.ann1.DA2DAM Arachis hypogaea HOM05D005705 ORTHO05D007152 7.5e-18 95.5 64 70.3
Eucgr.K02687 Eucalyptus grandis HOM05D005705 ORTHO05D007152 3.5e-15 86.7 96 49.0
Cpa.g.sc4.145 Carica papaya HOM05D005705 ORTHO05D007152 7.3e-13 79.0 78 52.6
MCO02G106 Micromonas commoda HOM05D005705 ORTHO05D007152 1.0e-11 75.1 56 53.6
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.4e-08 64.7 58 58.6
Aqoxy7G02243 Aquilegia oxysepala HOM05D006791 ORTHO05D008221 2.0e-07 60.8 271 26.9
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 4.6e-07 59.7 242 24.0
Zm00001eb013230 Zea mays HOM05D006791 ORTHO05D008221 3.0e-06 57.0 274 24.8
PSO339G2849 Papaver somniferum HOM05D006791 ORTHO05D008221 5.0e-06 56.2 246 25.2
GSVIVG01016310001 Vitis vinifera HOM05D006791 ORTHO05D008221 6.6e-06 55.8 253 26.1
PSO384G4004 Papaver somniferum HOM05D006791 ORTHO05D008221 8.6e-06 55.5 245 25.3


User provided reference genes

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