Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0188221 Rosa chinensis HOM05D002254 ORTHO05D347808 3.8e-45 184.5 96 100.0
RcHm_v2.0_Chr2g0104481 Rosa chinensis HOM05D002254 ORTHO05D340427 5.6e-28 127.5 72 94.4
FAN16G3547 Fragaria x ananassa HOM05D002254 ORTHO05D005423 6.2e-11 70.9 45 84.4
FAN21G0823 Fragaria x ananassa HOM05D002254 ORTHO05D005423 6.2e-11 70.9 45 84.4
RcHm_v2.0_Chr5g0024011 Rosa chinensis HOM05D002254 ORTHO05D005423 6.2e-11 70.9 45 84.4
FvH4_3g14560 Fragaria vesca HOM05D002254 ORTHO05D005423 1.4e-10 69.7 45 82.2
FAN11G0976 Fragaria x ananassa HOM05D002254 ORTHO05D005423 6.8e-10 67.4 45 80.0
HPP92_013266 Vanilla planifolia HOM05D002254 ORTHO05D005423 6.8e-10 67.4 45 80.0
HPP92_013271 Vanilla planifolia HOM05D002254 ORTHO05D005423 6.8e-10 67.4 45 80.0
MD01G1012100 Malus domestica HOM05D002254 ORTHO05D005423 8.9e-10 67.0 45 75.6
MD15G1337900 Malus domestica HOM05D002254 ORTHO05D005423 8.9e-10 67.0 45 75.6
Prupe.6G158000 Prunus persica HOM05D002254 ORTHO05D005423 1.2e-09 66.6 45 75.6
Sc06g0001400 Simmondsia chinensis HOM05D002254 ORTHO05D005423 1.2e-09 66.6 45 80.0
Aa31LG1G17310 Aethionema arabicum HOM05D002254 ORTHO05D005423 1.5e-09 66.2 45 80.0
Aa31LG3G17330 Aethionema arabicum HOM05D002254 ORTHO05D005423 1.5e-09 66.2 45 80.0
AL8G42060 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 1.5e-09 66.2 45 80.0
AUR62010099 Chenopodium quinoa HOM05D002254 ORTHO05D005423 1.5e-09 66.2 45 80.0
AUR62013095 Chenopodium quinoa HOM05D002254 ORTHO05D005423 1.5e-09 66.2 45 80.0
Ah.01g009370 Amaranthus hybridus HOM05D002254 ORTHO05D005423 2.0e-09 65.9 45 77.8
EL10Ac9g21444 Beta vulgaris HOM05D002254 ORTHO05D005423 2.0e-09 65.9 45 77.8
MBI10_g06742_MAGBIO Magnolia biondii HOM05D002254 ORTHO05D005423 2.6e-09 65.5 45 75.6
Hund06402 Selenicereus undatus HOM05D002254 ORTHO05D005423 2.6e-09 65.5 45 77.8
Nitab4.5_0000250g0020 Nicotiana tabacum HOM05D002254 ORTHO05D005423 3.4e-09 65.1 45 77.8
Nitab4.5_0004141g0030 Nicotiana tabacum HOM05D002254 ORTHO05D005423 3.4e-09 65.1 45 77.8
PGR102G3355 Punica granatum HOM05D002254 ORTHO05D005423 3.4e-09 65.1 45 77.8
PGR142G4456 Punica granatum HOM05D002254 ORTHO05D005423 3.4e-09 65.1 45 77.8
THA.LOC104799480 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 3.4e-09 65.1 45 77.8
CANSAT01G2903 Cannabis sativa HOM05D002254 ORTHO05D005423 4.4e-09 64.7 45 77.8
Carub.0006s0818 Capsella rubella HOM05D002254 ORTHO05D005423 4.4e-09 64.7 45 77.8
Carub.0008s2544 Capsella rubella HOM05D002254 ORTHO05D005423 4.4e-09 64.7 45 77.8
Ciclev10026667m.g Citrus clementina HOM05D002254 ORTHO05D005423 4.4e-09 64.7 45 77.8
Duzib264G0949 Durio zibethinus HOM05D002254 ORTHO05D005423 4.4e-09 64.7 45 75.6
Oeu037798.1 Olea europaea HOM05D002254 ORTHO05D005423 4.4e-09 64.7 45 77.8
Thecc.01G127100 Theobroma cacao HOM05D002254 ORTHO05D005423 4.4e-09 64.7 45 75.6
Atru.chr4.828 Acer truncatum HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
arahy.Tifrunner.gnm1.ann1.2KW32D Arachis hypogaea HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
arahy.Tifrunner.gnm1.ann1.FM41R7 Arachis hypogaea HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
arahy.Tifrunner.gnm1.ann1.N1TEIX Arachis hypogaea HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
Cfa002830 Carpinus fangiana HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
CiPaw.03G128400 Carya illinoinensis HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
COL.COLO4_14017 Corchorus olitorius HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
Gohir.D01G167600 Gossypium hirsutum HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
Gorai.002G208300 Gossypium raimondii HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
Os01g0839300 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
QL06p029474 Quercus lobata HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
TWI31G0091 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
TWI75G1050 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
GSVIVG01026526001 Vitis vinifera HOM05D002254 ORTHO05D005423 5.8e-09 64.3 45 75.6
MSTRG.2664 Avicennia marina HOM05D002254 ORTHO05D005423 7.6e-09 63.9 45 75.6
CsaV3_6G041770 Cucumis sativus L. HOM05D002254 ORTHO05D005423 7.6e-09 63.9 45 75.6
Dinv24771 Davidia involucrata HOM05D002254 ORTHO05D005423 7.6e-09 63.9 45 73.3
AL6G20170 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
Cc07_g18050 Coffea canephora HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
DCAR_001358 Daucus carota HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
Duzib147G0903 Durio zibethinus HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 73.3
ECA246G3091 Erigeron canadensis HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
Migut.H00743 Erythranthe guttata HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
Gohir.A01G176800 Gossypium hirsutum HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
HanXRQChr05g0152951 Helianthus annuus HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
HanXRQChr08g0236341 Helianthus annuus HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
Lsat_1_v5_gn_3_37780 Lactuca sativa HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
Lalb_Chr08g0238481 Lupinus albus HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 73.3
Os05g0460700 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
Psat5g056880 Pisum sativum HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
THA.LOC104818462 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
vmacro14290 Vaccinium macrocarpon HOM05D002254 ORTHO05D005423 9.9e-09 63.5 45 75.6
AT5G09770 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 1.3e-08 63.2 45 73.3
Cpa.g.sc42.118 Carica papaya HOM05D002254 ORTHO05D005423 1.3e-08 63.2 45 73.3
Dinv30096 Davidia involucrata HOM05D002254 ORTHO05D005423 1.3e-08 63.2 45 73.3
Manes.12G153000 Manihot esculenta HOM05D002254 ORTHO05D005423 1.3e-08 63.2 45 73.3
Solyc08g067950.3 Solanum lycopersicum HOM05D002254 ORTHO05D005423 1.3e-08 63.2 45 75.6
Sopen08g021870 Solanum pennellii HOM05D002254 ORTHO05D005423 1.3e-08 63.2 45 75.6
AT5G64650 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 1.7e-08 62.8 45 73.3
Potri.005G061700 Populus trichocarpa HOM05D002254 ORTHO05D005423 1.7e-08 62.8 45 71.1
Potri.007G107100 Populus trichocarpa HOM05D002254 ORTHO05D005423 1.7e-08 62.8 45 71.1
Aqoxy5G00323 Aquilegia oxysepala HOM05D002254 ORTHO05D005423 2.2e-08 62.4 45 75.6
Eucgr.H04941 Eucalyptus grandis HOM05D002254 ORTHO05D005423 2.2e-08 62.4 45 75.6
Sed0005738 Sechium edule HOM05D002254 ORTHO05D005423 2.2e-08 62.4 45 73.3
VMungo0647G1804 Vigna mungo HOM05D002254 ORTHO05D005423 2.2e-08 62.4 57 63.2
Actinidia06650 Actinidia chinensis HOM05D002254 ORTHO05D005423 2.9e-08 62.0 45 71.1
ATR0681G323 Amborella trichopoda HOM05D002254 ORTHO05D005423 2.9e-08 62.0 45 71.1
CSS0030870 Camellia sinensis var. sinensis HOM05D002254 ORTHO05D005423 2.9e-08 62.0 45 73.3
PGSC0003DMG400014486 Solanum tuberosum HOM05D002254 ORTHO05D005423 2.9e-08 62.0 45 73.3
TAR381G1435 Trochodendron aralioides HOM05D002254 ORTHO05D005423 2.9e-08 62.0 45 71.1
unitig_8.g4580 Utricularia gibba HOM05D002254 ORTHO05D005423 2.9e-08 62.0 45 71.1
Zm00001eb368030 Zea mays HOM05D002254 ORTHO05D005423 2.9e-08 62.0 45 73.3
Glyma.04G214500 Glycine max HOM05D002254 ORTHO05D005423 3.8e-08 61.6 57 63.2
Sabra07G0087600 Salix brachista HOM05D002254 ORTHO05D005423 3.8e-08 61.6 45 68.9
HPP92_013211 Vanilla planifolia HOM05D002254 ORTHO05D005423 3.8e-08 61.6 41 80.5
BcaB04g19981 Brassica carinata HOM05D002254 ORTHO05D005423 4.9e-08 61.2 45 73.3
BraA09t36526Z Brassica rapa HOM05D002254 ORTHO05D005423 4.9e-08 61.2 45 73.3
Glyma.06G151700 Glycine max HOM05D002254 ORTHO05D005423 4.9e-08 61.2 45 73.3
PSO541G1616 Papaver somniferum HOM05D002254 ORTHO05D005423 4.9e-08 61.2 86 50.0
Sp2g27710 Schrenkiella parvula HOM05D002254 ORTHO05D005423 4.9e-08 61.2 45 73.3
Sp6g33620 Schrenkiella parvula HOM05D002254 ORTHO05D005423 4.9e-08 61.2 45 73.3
TPR.G34646 Trifolium pratense HOM05D002254 ORTHO05D005423 4.9e-08 61.2 45 68.9
BcaC04g23302 Brassica carinata HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 71.1
C09p09930 Brassica napus HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 71.1
BolC9t53900H Brassica oleracea HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 71.1
CARHR278620 Cardamine hirsuta HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 71.1
CDE04G0736 Ceratophyllum demersum HOM05D002254 ORTHO05D005423 6.4e-08 60.8 43 74.4
Thhalv10014895m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 71.1
Hma1.2p1_0183F.1_g080930 Hydrangea macrophylla HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 71.1
Lj1g0024859 Lotus japonicus HOM05D002254 ORTHO05D005423 6.4e-08 60.8 57 61.4
Medtr3g095900 Medicago truncatula HOM05D002254 ORTHO05D005423 6.4e-08 60.8 57 59.6
PSO675G8066 Papaver somniferum HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 73.3
Phvul.009G148700 Phaseolus vulgaris HOM05D002254 ORTHO05D005423 6.4e-08 60.8 45 71.1
A09p08760 Brassica napus HOM05D002254 ORTHO05D005423 1.1e-07 60.1 45 71.1
Medtr8g103900 Medicago truncatula HOM05D002254 ORTHO05D005423 1.1e-07 60.1 57 57.9
BcaB01g05562 Brassica carinata HOM05D002254 ORTHO05D005423 1.4e-07 59.7 45 68.9
BcaB01g05660 Brassica carinata HOM05D002254 ORTHO05D005423 1.4e-07 59.7 45 68.9
A03p04230 Brassica napus HOM05D002254 ORTHO05D005423 1.4e-07 59.7 45 68.9
C03p04680 Brassica napus HOM05D002254 ORTHO05D005423 1.4e-07 59.7 45 68.9
BolC3t13002H Brassica oleracea HOM05D002254 ORTHO05D005423 1.4e-07 59.7 45 68.9
BolC3t13004H Brassica oleracea HOM05D002254 ORTHO05D005423 1.4e-07 59.7 45 68.9
BraA03t09768Z Brassica rapa HOM05D002254 ORTHO05D005423 1.4e-07 59.7 45 68.9
Ca_16929_v3 Cicer arietinum L. HOM05D002254 ORTHO05D005423 2.4e-07 58.9 45 71.1
CBR_g41367 Chara braunii HOM05D002254 ORTHO05D005423 4.2e-07 58.2 45 66.7
DCAR_005761 Daucus carota HOM05D002254 ORTHO05D005423 2.7e-06 55.5 45 64.4
VMungo1309G0562 Vigna mungo HOM05D002254 ORTHO05D005423 2.7e-06 55.5 44 65.9
Nn5g28635 Nelumbo nucifera HOM05D002254 ORTHO05D005423 4.6e-06 54.7 59 57.6
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 4.6e-06 54.7 53 58.5
MELO3C008044.2 Cucumis melo HOM05D002254 ORTHO05D005423 6.0e-06 54.3 38 76.3
Pp3c16_7040 Physcomitrium patens HOM05D002254 ORTHO05D005423 6.0e-06 54.3 45 62.2
ClCG01G015530 Citrullus lanatus HOM05D002254 ORTHO05D005423 7.8e-06 53.9 38 76.3


User provided reference genes

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