Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 1.4e-209 732.6 360 100.0
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.9e-135 485.3 338 76.0
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 5.7e-134 481.5 365 72.3
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 3.1e-116 422.5 287 78.4
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 8.6e-106 387.9 240 82.1
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 7.5e-94 348.2 395 51.4
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 1.4e-84 317.4 391 48.6
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 1.6e-75 287.3 396 44.4
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 4.9e-69 265.8 391 40.9
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 3.8e-61 239.6 415 37.6
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 7.1e-60 235.3 423 38.1
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.5e-57 227.6 402 38.6
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 2.5e-57 226.9 423 38.1
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 3.3e-57 226.5 406 37.7
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.2e-53 213.8 469 34.5
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 2.5e-52 210.3 404 34.9
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 4.3e-49 199.5 417 34.8
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 2.8e-48 196.8 383 35.2
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 4.8e-48 196.1 402 33.6
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 1.5e-46 191.0 412 33.5
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 2.0e-46 190.7 401 33.7
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 3.4e-46 189.9 415 33.0
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 3.4e-46 189.9 338 38.2
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 2.2e-45 187.2 441 31.5
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 4.2e-44 183.0 377 34.2
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 7.2e-44 182.2 374 33.7
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 2.7e-43 180.3 373 34.9
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 1.0e-42 178.3 259 42.5
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.0e-42 176.8 263 40.7
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 8.7e-42 175.3 374 35.3
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 1.1e-39 168.3 412 34.2
FAN18G2456 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.4e-39 167.2 115 74.8
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 2.6e-38 163.7 238 39.5
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.3e-37 161.4 367 33.5
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 2.5e-36 157.1 383 31.6
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 5.5e-36 156.0 381 31.2
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.2e-35 154.8 157 51.6
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 4.3e-33 146.4 385 30.6
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.3e-33 146.4 159 46.5
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 2.8e-32 143.7 161 46.0
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 4.8e-32 142.9 153 47.7
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 5.3e-31 139.4 150 47.3
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 6.9e-31 139.0 169 45.0
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 9.1e-31 138.7 160 46.2
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.5e-30 137.9 142 50.0
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.0e-30 137.5 158 46.2
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 2.6e-30 137.1 161 44.7
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 3.4e-30 136.7 153 45.8
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.4e-30 136.7 401 29.2
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 4.5e-30 136.3 149 47.0
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.2e-29 134.0 159 47.8
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 2.2e-29 134.0 193 38.3
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 2.2e-29 134.0 161 42.2
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.8e-29 133.3 152 47.4
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 8.5e-29 132.1 164 43.9
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.4e-28 131.3 154 44.8
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.9e-28 131.0 154 48.7
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 2.5e-28 130.6 423 28.1
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 3.2e-28 130.2 153 46.4
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 5.5e-28 129.4 184 40.8
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 5.5e-28 129.4 154 44.8
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 9.4e-28 128.6 399 29.6
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.6e-27 127.9 237 37.6
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.6e-27 127.9 156 48.1
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 2.1e-27 127.5 148 46.6
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 2.7e-27 127.1 205 36.6
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 3.6e-27 126.7 159 42.1
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.6e-27 126.7 162 41.4
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.7e-27 126.3 186 40.3
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 4.7e-27 126.3 156 42.3
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.9e-27 125.6 135 47.4
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 1.0e-26 125.2 207 39.1
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 3.0e-26 123.6 151 43.7
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 3.0e-26 123.6 155 45.8
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.9e-26 123.2 159 42.1
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 5.1e-26 122.9 149 45.0
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 6.7e-26 122.5 143 43.4
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 8.8e-26 122.1 143 44.1
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 1.5e-25 121.3 158 44.3
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.5e-25 121.3 160 45.0
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 1.5e-25 121.3 156 44.2
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 2.0e-25 120.9 149 45.6
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 2.0e-25 120.9 220 34.5
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 2.8e-24 117.1 171 39.2
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 3.7e-24 116.7 149 43.0
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 4.8e-24 116.3 152 46.1
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.1e-23 115.2 145 45.5
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 1.4e-23 114.8 180 38.3
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.8e-23 114.4 152 43.4
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 1.6e-22 111.3 225 33.3
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.6e-22 111.3 152 41.4
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 2.6e-22 110.5 164 41.5
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 5.9e-22 109.4 165 42.4
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 5.9e-22 109.4 164 40.9
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 1.0e-21 108.6 132 47.0
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 1.3e-21 108.2 161 39.1
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.7e-21 107.8 138 39.9
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 1.7e-21 107.8 226 31.0
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 2.9e-21 107.1 193 32.1
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 5.0e-21 106.3 207 32.9
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 6.5e-21 105.9 150 41.3
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 1.1e-20 105.1 175 35.4
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 1.9e-20 104.4 178 34.3
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 3.2e-20 103.6 121 44.6
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 3.2e-20 103.6 163 37.4
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 7.2e-20 102.4 162 34.6
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 7.2e-20 102.4 161 37.9
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 4.7e-19 99.8 163 37.4
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.7e-19 99.8 265 31.3
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 1.4e-18 98.2 178 35.4
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 3.0e-18 97.1 163 36.2
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 5.2e-18 96.3 179 35.8
ECA232G0957 Erigeron canadensis HOM05D005220 ORTHO05D006082 6.7e-18 95.9 224 31.2
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 2.0e-17 94.4 178 36.0
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 2.6e-17 94.0 348 28.7
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 7.5e-17 92.4 127 45.7
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 2.8e-16 90.5 132 38.6
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 1.1e-15 88.6 188 34.6
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 2.4e-15 87.4 262 32.1
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 7.0e-15 85.9 171 32.7
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 1.2e-14 85.1 119 40.3
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.6e-14 84.7 191 33.0
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 1.6e-14 84.7 128 39.1
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 2.0e-14 84.3 165 37.6
THA.LOC104818515 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.0e-14 84.3 274 31.4
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 2.7e-14 84.0 127 40.2
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 4.5e-14 83.2 130 39.2
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 4.5e-14 83.2 153 37.9
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.0e-13 82.0 191 31.9
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.3e-13 81.6 191 31.9
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 1.7e-13 81.3 116 41.4
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.8e-13 80.1 189 29.6
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 5.0e-13 79.7 156 32.1
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 6.5e-13 79.3 187 31.6
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 2.5e-12 77.4 194 27.8
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 4.2e-12 76.6 128 34.4
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 1.2e-11 75.1 186 29.0
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 2.1e-11 74.3 232 25.0
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 8.0e-11 72.4 79 46.8
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 8.0e-11 72.4 77 48.1
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 4.0e-10 70.1 213 28.6
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 6.8e-10 69.3 57 49.1
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 6.8e-10 69.3 205 26.3
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 2.0e-09 67.8 162 31.5
CARHR274940 Cardamine hirsuta HOM05D001456 ORTHO05D014991 2.0e-09 67.8 186 28.0
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 2.6e-09 67.4 129 31.8
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 2.6e-09 67.4 225 25.8
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 4.4e-09 66.6 123 29.3
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 7.5e-09 65.9 125 33.6
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 3.7e-08 63.5 149 28.2
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 4.8e-08 63.2 180 30.0
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 4.8e-08 63.2 140 29.3
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 8.3e-08 62.4 219 25.6
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.3e-08 62.4 180 30.0
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-07 61.6 164 30.5
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.8e-07 61.2 198 24.7
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 3.1e-07 60.5 197 25.9
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.4e-07 59.7 128 30.5
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 5.4e-07 59.7 138 26.1
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 7.0e-07 59.3 168 26.8
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.0e-07 59.3 180 29.4
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 1.2e-06 58.5 184 23.4
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.6e-06 58.2 191 25.1
Ah.15g098240 Amaranthus hybridus HOM05D005220 ORTHO05D006082 2.0e-06 57.8 98 29.6
SEGI_37162 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 2.7e-06 57.4 224 22.3
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 4.5e-06 56.6 249 20.9
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 4.5e-06 56.6 223 23.8
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 5.9e-06 56.2 194 26.3
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 5.9e-06 56.2 117 29.1
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 5.9e-06 56.2 117 29.1
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 5.9e-06 56.2 119 29.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 5.9e-06 56.2 192 27.1
Os09g0421700 Oryza sativa ssp. japonica HOM05D015084 ORTHO05D015160 7.7e-06 55.8 196 25.0


User provided reference genes

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