Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0182481 Rosa chinensis HOM05D009223 ORTHO05D000088 3.1e-53 211.5 100 100.0
RcHm_v2.0_Chr7g0182461 Rosa chinensis HOM05D000395 ORTHO05D000088 5.6e-31 137.5 82 74.4
RcHm_v2.0_Chr7g0182521 Rosa chinensis HOM05D009223 ORTHO05D011728 8.1e-30 133.7 93 71.0
RcHm_v2.0_Chr7g0182451 Rosa chinensis HOM05D000395 ORTHO05D000088 1.2e-28 129.8 82 69.5
FAN18G0115 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.6e-28 128.6 84 65.5
FvH4_5g16850 Fragaria vesca HOM05D000395 ORTHO05D000088 3.4e-28 128.3 84 65.5
RcHm_v2.0_Chr7g0211791 Rosa chinensis HOM05D000395 ORTHO05D000088 7.6e-28 127.1 84 64.3
FAN13G2251 Fragaria x ananassa HOM05D009223 ORTHO05D000088 9.9e-28 126.7 94 61.7
RcHm_v2.0_Chr7g0179221 Rosa chinensis HOM05D000395 ORTHO05D000088 9.9e-28 126.7 84 65.5
RcHm_v2.0_Chr7g0182511 Rosa chinensis HOM05D000395 ORTHO05D000088 4.3e-23 111.3 127 45.7
FAN08G1617 Fragaria x ananassa HOM05D009223 ORTHO05D000088 7.3e-23 110.5 95 56.8
FAN03G1049 Fragaria x ananassa HOM05D009223 ORTHO05D011728 9.9e-20 100.1 87 54.0
FAN10G3880 Fragaria x ananassa HOM05D009223 ORTHO05D011728 3.8e-19 98.2 87 54.0
RcHm_v2.0_Chr1g0382011 Rosa chinensis HOM05D009223 ORTHO05D011728 3.8e-19 98.2 95 50.5
FAN01G2737 Fragaria x ananassa HOM05D009223 ORTHO05D011728 4.9e-19 97.8 87 52.9
FAN10G0039 Fragaria x ananassa HOM05D009223 ORTHO05D011728 4.9e-19 97.8 87 54.0
FvH4_7g32412 Fragaria vesca HOM05D009223 ORTHO05D011728 1.1e-18 96.7 81 55.6
FAN03G0972 Fragaria x ananassa HOM05D009223 ORTHO05D011728 1.1e-18 96.7 87 51.7
RcHm_v2.0_Chr1g0375031 Rosa chinensis HOM05D009223 ORTHO05D011728 1.1e-18 96.7 98 50.0
FvH4_7g32411 Fragaria vesca HOM05D009223 ORTHO05D011728 4.2e-18 94.7 87 50.6
RcHm_v2.0_Chr1g0382001 Rosa chinensis HOM05D009223 ORTHO05D011728 4.2e-18 94.7 89 51.7
FAN10G1349 Fragaria x ananassa HOM05D009223 ORTHO05D011728 7.1e-18 94.0 93 48.4
FAN10G2893 Fragaria x ananassa HOM05D009223 ORTHO05D011728 9.3e-18 93.6 94 47.9
FvH4_7g32413 Fragaria vesca HOM05D009223 ORTHO05D011728 6.0e-17 90.9 90 45.6
MD05G1037200 Malus domestica HOM05D000395 ORTHO05D000088 1.2e-12 76.6 98 43.9
COL.COLO4_11082 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.0e-12 75.9 95 44.2
FvH4_1g29511 Fragaria vesca HOM05D009223 ORTHO05D011728 2.6e-12 75.5 88 46.6
Prupe.7G143300 Prunus persica HOM05D000395 ORTHO05D000088 2.6e-12 75.5 84 47.6
Prupe.7G143400 Prunus persica HOM05D000395 ORTHO05D000088 2.6e-12 75.5 82 47.6
RcHm_v2.0_Chr2g0103581 Rosa chinensis HOM05D000395 ORTHO05D000088 7.6e-12 73.9 82 48.8
FvH4_3g34770 Fragaria vesca HOM05D000395 ORTHO05D000088 1.3e-11 73.2 100 42.0
FAN10G1868 Fragaria x ananassa HOM05D009223 ORTHO05D011728 1.3e-11 73.2 66 51.5
FAN03G0180 Fragaria x ananassa HOM05D009223 ORTHO05D011728 2.2e-11 72.4 63 50.8
FAN06G4333 Fragaria x ananassa HOM05D009223 ORTHO05D011728 2.9e-11 72.0 61 54.1
TWI09G1538 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.9e-11 72.0 83 44.6
FAN16G1797 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.9e-11 71.2 100 41.0
FAN21G1764 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.9e-11 71.2 94 42.6
FAN20G0945 Fragaria x ananassa HOM05D009223 ORTHO05D011728 8.4e-11 70.5 60 53.3
Gohir.A10G093700 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.4e-10 69.7 78 46.2
Thecc.01G046900 Theobroma cacao HOM05D000395 ORTHO05D000088 1.4e-10 69.7 85 49.4
COL.COLO4_11372 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.9e-10 69.3 87 39.1
COL.COLO4_22199 Corchorus olitorius HOM05D000395 ORTHO05D000088 3.2e-10 68.6 82 43.9
FvH4_6g40050 Fragaria vesca HOM05D009223 ORTHO05D011728 4.2e-10 68.2 83 43.4
RcHm_v2.0_Chr5g0062511 Rosa chinensis HOM05D000395 ORTHO05D000088 4.2e-10 68.2 98 42.9
FvH4_1g14710 Fragaria vesca HOM05D000395 ORTHO05D000088 7.1e-10 67.4 92 43.5
COL.COLO4_11359 Corchorus olitorius HOM05D000395 ORTHO05D000088 9.3e-10 67.0 83 38.6
Glyma.09G117200 Glycine max HOM05D000395 ORTHO05D000088 9.3e-10 67.0 77 42.9
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.2e-09 66.6 76 40.8
FAN19G1689 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.6e-09 66.2 92 42.4
Manes.07G112905 Manihot esculenta HOM05D000395 ORTHO05D000088 2.7e-09 65.5 86 40.7
MD02G1160400 Malus domestica HOM05D000395 ORTHO05D000088 3.5e-09 65.1 64 46.9
COL.COLO4_22726 Corchorus olitorius HOM05D000395 ORTHO05D000088 4.6e-09 64.7 91 39.6
Glyma.16G046700 Glycine max HOM05D000395 ORTHO05D000088 4.6e-09 64.7 81 39.5
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.6e-09 64.7 100 37.0
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 6.0e-09 64.3 82 41.5
COL.COLO4_25173 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.9e-09 63.9 84 41.7
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 7.9e-09 63.9 82 41.5
Thecc.01G047000 Theobroma cacao HOM05D000395 ORTHO05D000088 7.9e-09 63.9 85 45.9
COL.COLO4_27399 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.0e-08 63.5 83 43.4
QL05p084622 Quercus lobata HOM05D000395 ORTHO05D000088 1.3e-08 63.2 85 43.5
QL05p085016 Quercus lobata HOM05D000395 ORTHO05D000088 1.3e-08 63.2 85 44.7
QL06p043901 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-08 62.8 83 39.8
TWI12G0040 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.8e-08 62.8 76 40.8
VMungo1383G3002 Vigna mungo HOM05D000395 ORTHO05D000088 1.8e-08 62.8 81 37.0
COL.COLO4_30632 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.3e-08 62.4 78 42.3
TWI09G0938 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.0e-08 62.0 77 39.0
CiPaw.01G027300 Carya illinoinensis HOM05D000395 ORTHO05D000088 3.9e-08 61.6 96 36.5
FAN10G4136 Fragaria x ananassa HOM05D001649 ORTHO05D011728 3.9e-08 61.6 46 52.2
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 3.9e-08 61.6 77 40.3
TPR.G10186 Trifolium pratense HOM05D000395 ORTHO05D000088 3.9e-08 61.6 85 38.8
COL.COLO4_27400 Corchorus olitorius HOM05D000395 ORTHO05D000088 5.1e-08 61.2 83 39.8
Lj7A19G29 Lonicera japonica HOM05D000395 ORTHO05D000088 5.1e-08 61.2 91 37.4
Manes.10G033150 Manihot esculenta HOM05D000395 ORTHO05D000088 5.1e-08 61.2 84 35.7
Medtr7g050720 Medicago truncatula HOM05D000395 ORTHO05D000088 5.1e-08 61.2 84 36.9
SHI25390 Sapria himalayana HOM05D000395 ORTHO05D000088 5.1e-08 61.2 76 39.5
ClCG02G013120 Citrullus lanatus HOM05D000395 ORTHO05D000088 6.7e-08 60.8 87 42.5
COL.COLO4_25308 Corchorus olitorius HOM05D000395 ORTHO05D000088 6.7e-08 60.8 78 39.7
Eucgr.I00406 Eucalyptus grandis HOM05D000395 ORTHO05D000088 6.7e-08 60.8 89 36.0
Lsat_1_v5_gn_2_87020 Lactuca sativa HOM05D000395 ORTHO05D000088 6.7e-08 60.8 89 34.8
TWI73G1024 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.7e-08 60.8 77 40.3
Manes.13G130900 Manihot esculenta HOM05D000395 ORTHO05D000088 8.7e-08 60.5 86 39.5
Prupe.6G229600 Prunus persica HOM05D000395 ORTHO05D000088 8.7e-08 60.5 96 35.4
Medtr3g098790 Medicago truncatula HOM05D000395 ORTHO05D000088 1.1e-07 60.1 86 36.0
COL.COLO4_30629 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.5e-07 59.7 78 41.0
Medtr8g103940 Medicago truncatula HOM05D000395 ORTHO05D000088 1.5e-07 59.7 87 33.3
SHI08730 Sapria himalayana HOM05D000395 ORTHO05D000088 1.5e-07 59.7 62 43.5
Lj7A17T43 Lonicera japonica HOM05D000395 ORTHO05D000088 1.9e-07 59.3 91 36.3
PGR102G2039 Punica granatum HOM05D000395 ORTHO05D000088 1.9e-07 59.3 86 40.7
COL.COLO4_11356 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.5e-07 58.9 98 34.7
TPR.G6085 Trifolium pratense HOM05D000395 ORTHO05D000088 2.5e-07 58.9 85 35.3
TWI09G0601 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.5e-07 58.9 96 33.3
TWI09G0933 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.5e-07 58.9 83 38.6
Eucgr.D00267 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.3e-07 58.5 76 39.5
Lalb_Chr19g0126241 Lupinus albus HOM05D000395 ORTHO05D000088 3.3e-07 58.5 84 34.5
Psat6g097800 Pisum sativum HOM05D000395 ORTHO05D000088 3.3e-07 58.5 76 38.2
QL05p084669 Quercus lobata HOM05D000395 ORTHO05D000088 3.3e-07 58.5 97 38.1
Gohir.D03G019675 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.3e-07 58.2 82 35.4
Lj1g0010041 Lotus japonicus HOM05D000395 ORTHO05D000088 4.3e-07 58.2 86 32.6
Manes.07G115100 Manihot esculenta HOM05D000395 ORTHO05D000088 4.3e-07 58.2 78 41.0
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 5.7e-07 57.8 66 45.5
COL.COLO4_22197 Corchorus olitorius HOM05D000395 ORTHO05D000088 5.7e-07 57.8 86 36.0
COL.COLO4_22200 Corchorus olitorius HOM05D000395 ORTHO05D000088 5.7e-07 57.8 82 35.4
Manes.10G031300 Manihot esculenta HOM05D000395 ORTHO05D000088 5.7e-07 57.8 96 35.4
Psat0s4106g0080 Pisum sativum HOM05D000395 ORTHO05D000088 5.7e-07 57.8 84 35.7
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 5.7e-07 57.8 90 40.0
Medtr7g050640 Medicago truncatula HOM05D000395 ORTHO05D000088 7.4e-07 57.4 76 36.8
QL10p038826 Quercus lobata HOM05D000395 ORTHO05D000088 7.4e-07 57.4 76 39.5
ClCG02G013090 Citrullus lanatus HOM05D000395 ORTHO05D000088 9.6e-07 57.0 102 34.3
Phvul.008G140100 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 9.6e-07 57.0 81 34.6
TWI73G0729 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 9.6e-07 57.0 76 36.8
COL.COLO4_33145 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.3e-06 56.6 82 35.4
Eucgr.I00403 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.3e-06 56.6 84 38.1
TWI12G0089 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.3e-06 56.6 78 38.5
AUR62017524 Chenopodium quinoa HOM05D000395 ORTHO05D000088 1.6e-06 56.2 66 40.9
Cc07_g20140 Coffea canephora HOM05D000395 ORTHO05D000088 1.6e-06 56.2 81 37.0
Lj7C16T13 Lonicera japonica HOM05D000395 ORTHO05D000088 1.6e-06 56.2 82 36.6
COL.COLO4_22201 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.1e-06 55.8 83 38.6
MELO3C020922.2 Cucumis melo HOM05D000395 ORTHO05D000088 2.8e-06 55.5 86 37.2
Duzib147G0434 Durio zibethinus HOM05D000395 ORTHO05D000088 2.8e-06 55.5 82 39.0
FvH4_7g32450 Fragaria vesca HOM05D009223 ORTHO05D011728 2.8e-06 55.5 50 48.0
Gohir.A02G160850 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.8e-06 55.5 82 35.4
Lj5g0017900 Lotus japonicus HOM05D000212 ORTHO05D005509 2.8e-06 55.5 81 34.6
Psat3g152560 Pisum sativum HOM05D000395 ORTHO05D000088 2.8e-06 55.5 62 41.9
TWI09G0687 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.8e-06 55.5 86 33.7
Glyma.08G339100 Glycine max HOM05D000395 ORTHO05D000088 3.7e-06 55.1 71 36.6
Gorai.003G020300 Gossypium raimondii HOM05D000395 ORTHO05D000088 3.7e-06 55.1 81 34.6
Manes.07G112902 Manihot esculenta HOM05D000395 ORTHO05D000088 3.7e-06 55.1 81 34.6
Manes.10G033500 Manihot esculenta HOM05D000395 ORTHO05D000088 3.7e-06 55.1 83 36.1
PGR004G1790 Punica granatum HOM05D000395 ORTHO05D000088 3.7e-06 55.1 82 39.0
COL.COLO4_22195 Corchorus olitorius HOM05D000395 ORTHO05D000088 4.8e-06 54.7 88 34.1
Lj1g0013794 Lotus japonicus HOM05D000395 ORTHO05D000088 4.8e-06 54.7 76 36.8
Manes.07G115000 Manihot esculenta HOM05D000395 ORTHO05D000088 4.8e-06 54.7 96 34.4
TWI09G1284 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.8e-06 54.7 78 32.1
Gohir.D03G019600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 6.2e-06 54.3 83 36.1
Gorai.003G020000 Gossypium raimondii HOM05D000395 ORTHO05D000088 6.2e-06 54.3 83 36.1
arahy.Tifrunner.gnm1.ann1.335W22 Arachis hypogaea HOM05D000395 ORTHO05D000088 8.2e-06 53.9 77 37.7
arahy.Tifrunner.gnm1.ann1.KVNU80 Arachis hypogaea HOM05D000395 ORTHO05D000088 8.2e-06 53.9 77 37.7
MELO3C017619.2 Cucumis melo HOM05D000395 ORTHO05D000088 8.2e-06 53.9 92 29.3
CsaV3_2G017200 Cucumis sativus L. HOM05D000395 ORTHO05D000088 8.2e-06 53.9 70 40.0
Lalb_Chr19g0126231 Lupinus albus HOM05D000395 ORTHO05D000088 8.2e-06 53.9 81 34.6
Manes.13G130950 Manihot esculenta HOM05D000395 ORTHO05D000088 8.2e-06 53.9 98 31.6


User provided reference genes

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