Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 7.5e-280 966.5 465 100.0
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 7.9e-237 823.5 463 83.4
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.3e-236 822.0 463 83.2
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.6e-234 815.8 463 82.5
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.2e-229 799.7 498 76.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.7e-227 790.8 494 76.7
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.2e-223 778.9 464 80.2
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 2.3e-135 486.5 459 53.4
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 6.2e-133 478.4 468 53.0
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 9.3e-129 464.5 379 58.3
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.1e-124 449.5 461 48.4
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 6.5e-122 441.8 461 47.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.4e-121 440.7 461 48.2
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 7.2e-121 438.3 461 48.8
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 6.7e-119 431.8 462 47.0
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.5e-115 420.6 463 47.1
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.5e-115 420.6 459 46.2
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.0e-115 420.2 463 47.1
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 2.6e-115 419.9 442 47.1
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.0e-114 417.9 462 44.8
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.9e-113 413.7 429 48.7
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.6e-112 410.6 463 45.6
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 2.7e-112 409.8 466 44.6
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.8e-111 407.1 461 45.6
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 6.7e-111 405.2 462 44.6
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 3.3e-110 402.9 408 49.5
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 3.3e-110 402.9 459 45.1
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 9.7e-110 401.4 465 45.2
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 8.2e-109 398.3 462 43.7
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 4.1e-108 396.0 467 44.3
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.2e-107 394.4 463 43.6
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.0e-107 393.7 547 39.7
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.6e-107 393.3 467 43.9
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 4.5e-107 392.5 440 45.5
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.0e-106 391.3 467 43.7
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 6.5e-106 388.7 466 43.1
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 8.5e-106 388.3 465 43.7
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.5e-105 386.7 463 43.4
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 3.2e-105 386.3 463 45.1
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.7e-104 383.3 460 42.8
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.0e-103 381.3 463 44.3
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 6.7e-103 378.6 462 43.5
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.0e-102 377.1 511 40.3
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 7.4e-102 375.2 461 42.1
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 2.2e-101 373.6 463 42.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.8e-100 370.5 464 43.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 5.3e-100 369.0 461 43.0
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 9.1e-100 368.2 449 41.6
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 5.9e-99 365.5 468 41.5
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.9e-97 360.5 458 41.9
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.5e-97 360.1 461 41.4
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 4.2e-97 359.4 458 41.7
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 7.2e-97 358.6 461 41.4
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.2e-96 357.8 458 41.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 6.1e-96 355.5 474 41.6
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.7e-93 346.3 473 40.4
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.7e-93 346.3 461 40.8
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 4.8e-93 345.9 464 42.2
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.1e-92 344.7 461 40.6
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.4e-92 344.4 473 41.0
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.1e-92 343.2 445 42.0
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 5.3e-92 342.4 446 42.6
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.0e-90 335.9 460 39.6
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.8e-87 327.4 490 39.8
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.2e-86 324.7 465 38.1
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 2.0e-86 323.9 466 38.6
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 5.7e-86 322.4 449 40.3
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 9.8e-86 321.6 359 44.0
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 6.3e-85 318.9 465 41.3
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.4e-84 317.8 455 39.6
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.5e-83 313.2 468 39.7
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 5.0e-82 309.3 449 39.9
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.2e-81 306.6 381 43.8
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 5.5e-81 305.8 482 38.0
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 8.0e-80 302.0 396 41.4
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 8.0e-80 302.0 419 39.6
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.4e-79 301.2 449 36.3
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 4.0e-79 299.7 378 43.1
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 4.0e-79 299.7 459 37.3
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.2e-78 298.1 449 36.1
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 7.5e-78 295.4 449 35.6
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.2e-77 293.9 410 40.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.2e-77 293.9 468 38.9
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 6.3e-77 292.4 537 35.6
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.1e-76 291.6 461 36.0
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.0e-74 285.0 467 35.5
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.5e-73 280.4 471 36.3
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.2e-72 278.1 472 36.4
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.4e-71 274.6 482 33.8
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.0e-70 270.8 486 35.2
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 5.7e-70 269.2 459 36.2
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 7.5e-70 268.9 459 36.8
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 9.8e-70 268.5 426 36.9
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.9e-69 266.9 473 35.1
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.8e-68 264.2 484 34.9
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.4e-68 262.7 479 35.1
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 9.2e-68 261.9 447 34.9
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.6e-67 261.2 462 35.1
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.0e-66 258.5 464 34.9
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 2.3e-66 257.3 462 34.8
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 3.9e-66 256.5 465 34.8
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.6e-66 255.8 462 35.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.5e-65 253.8 487 34.1
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 4.3e-65 253.1 462 34.8
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 9.5e-65 251.9 389 37.3
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.6e-64 251.1 467 34.9
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 3.6e-64 250.0 464 34.7
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.4e-63 248.1 459 34.4
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.4e-63 248.1 477 32.7
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.4e-63 248.1 477 32.7
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 8.9e-63 245.4 463 33.3
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 2.0e-62 244.2 307 40.7
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 3.7e-61 240.0 466 33.3
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.4e-60 238.0 306 40.8
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.9e-60 237.7 463 33.3
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 9.2e-60 235.3 470 33.4
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.2e-59 235.0 471 34.0
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.6e-59 234.6 267 45.7
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.0e-59 234.2 258 46.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-57 228.4 421 35.4
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 4.3e-57 226.5 463 32.8
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 4.7e-56 223.0 466 33.3
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 4.7e-56 223.0 466 33.3
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 4.7e-56 223.0 466 32.4
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 6.2e-56 222.6 493 31.8
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 8.1e-56 222.2 382 36.6
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 9.8e-54 215.3 464 32.5
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.3e-53 214.9 463 33.3
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 3.7e-53 213.4 460 32.4
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 3.7e-53 213.4 470 32.8
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.4e-52 210.7 331 38.7
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 2.7e-51 207.2 264 44.3
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 5.1e-50 203.0 489 30.7
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 5.1e-50 203.0 492 29.3
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 4.3e-49 199.9 311 37.0
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.2e-48 198.4 453 30.2
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 4.0e-47 193.4 306 36.3
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 6.8e-47 192.6 319 37.9
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 8.9e-47 192.2 250 39.6
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.7e-45 188.0 357 33.9
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.7e-45 188.0 492 28.7
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.1e-44 185.3 305 35.4
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.3e-41 173.3 290 37.6
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.8e-38 162.9 308 34.4
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.7e-34 151.4 504 28.8
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.6e-32 144.8 197 40.6
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 2.6e-30 137.5 146 47.3
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.2e-28 130.2 139 48.2
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.8e-26 124.8 204 39.7
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.6e-25 119.0 126 47.6
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 1.7e-21 108.2 302 29.8
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.9e-20 104.8 430 27.2
FAN18G4048 Fragaria x ananassa HOM05D026708 ORTHO05D004543 2.1e-16 91.3 118 49.2
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.2e-16 89.7 125 40.0
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 1.2e-14 85.5 87 48.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.8e-14 83.2 159 34.6
FAN13G0919 Fragaria x ananassa HOM05D026708 ORTHO05D004543 7.1e-12 76.3 118 46.6
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 3.5e-11 73.9 64 54.7
FvH4_5g17410 Fragaria vesca HOM05D026708 ORTHO05D045919 6.0e-11 73.2 118 44.1
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 6.7e-10 69.7 133 31.6
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 6.7e-10 69.7 82 40.2
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.6e-08 65.1 136 33.1
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.8e-07 61.6 87 33.3
FAN08G0241 Fragaria x ananassa HOM05D026708 ORTHO05D045919 5.3e-07 60.1 118 38.1
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 5.3e-07 60.1 61 44.3
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 4.5e-06 57.0 78 41.0


User provided reference genes

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