Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 0.0e+00 1207.6 689 100.0
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.1e-286 988.8 684 86.8
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.3e-275 953.0 721 76.1
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 4.4e-268 927.9 684 82.9
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.2e-267 925.6 684 82.6
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.2e-266 921.8 684 82.6
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 2.2e-259 899.0 687 78.6
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.4e-250 869.8 685 77.2
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.5e-223 780.0 711 65.5
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.0e-219 767.3 685 69.6
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.3e-219 766.9 680 70.9
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 9.6e-215 750.7 667 70.5
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.1e-214 749.6 681 67.3
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 2.8e-214 749.2 678 67.3
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 4.8e-214 748.4 678 68.9
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 4.8e-214 748.4 683 67.8
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.1e-213 745.3 684 68.9
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.5e-212 741.9 689 67.5
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 5.9e-212 741.5 679 69.2
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 1.0e-211 740.7 676 64.9
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.7e-211 740.0 629 72.2
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 5.0e-211 738.4 688 65.4
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 6.5e-211 738.0 682 68.9
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.9e-210 736.5 679 68.5
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.2e-210 735.7 684 64.8
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 5.5e-210 734.9 681 68.6
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 7.2e-210 734.6 684 64.8
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.3e-208 730.3 692 62.7
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 6.7e-208 728.0 677 65.4
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.9e-207 726.5 685 66.9
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 5.7e-207 724.9 715 59.9
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.6e-206 723.4 684 63.2
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.6e-206 723.4 680 64.1
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.6e-206 723.4 668 65.3
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 3.7e-206 722.2 680 63.5
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.4e-205 719.5 680 69.4
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 6.9e-205 718.0 691 67.6
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 9.0e-205 717.6 578 69.9
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.0e-204 716.5 677 66.5
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 4.5e-204 715.3 705 65.5
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.0e-203 714.1 675 67.1
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.8e-203 712.2 689 62.7
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.4e-202 710.3 683 66.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.2e-202 708.8 680 66.3
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 6.1e-201 704.9 690 61.7
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.0e-200 704.1 702 61.5
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.8e-200 703.4 675 67.1
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.8e-200 703.4 673 66.6
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.1e-199 700.7 676 62.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.5e-199 700.3 680 66.3
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.5e-199 700.3 713 62.7
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 4.3e-199 698.7 673 66.6
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 5.7e-199 698.4 681 66.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 7.4e-199 698.0 685 65.0
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.7e-198 696.8 667 67.0
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 2.8e-198 696.0 663 66.2
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.1e-197 694.1 683 65.9
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.4e-197 693.0 683 63.0
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 6.9e-197 691.4 685 61.5
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.7e-195 686.8 688 63.2
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.2e-195 686.4 681 63.3
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 3.2e-194 682.6 662 64.5
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.2e-194 682.2 668 56.6
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 4.2e-194 682.2 678 61.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 7.2e-194 681.4 679 61.3
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 1.6e-193 680.2 679 64.4
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 3.6e-193 679.1 671 61.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 4.7e-193 678.7 671 61.7
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.1e-193 678.3 671 61.5
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 6.1e-193 678.3 678 60.8
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 6.1e-193 678.3 671 62.0
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.0e-192 677.6 671 61.4
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.4e-192 677.2 671 61.4
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.4e-192 677.2 671 61.4
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.8e-192 676.8 679 61.7
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.3e-192 676.4 656 62.7
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.1e-191 674.1 666 61.3
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.5e-191 673.7 693 60.5
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 2.6e-191 672.9 680 63.7
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 4.4e-191 672.2 669 63.8
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 7.4e-191 671.4 682 59.8
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 7.4e-191 671.4 686 61.1
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 7.4e-191 671.4 534 74.3
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.8e-190 669.5 680 63.7
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 6.3e-190 668.3 673 60.3
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 8.2e-190 667.9 671 60.2
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 8.2e-190 667.9 679 61.1
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.1e-189 667.5 695 58.8
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.2e-188 664.1 674 59.9
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.3e-187 660.6 663 60.5
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.3e-187 660.6 571 67.3
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.2e-185 654.1 686 62.2
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.6e-185 653.7 673 59.0
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.1e-185 653.3 575 66.8
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 2.1e-185 653.3 705 61.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.0e-184 651.0 644 59.3
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.4e-184 650.6 652 63.8
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.8e-184 650.2 613 69.2
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 3.0e-184 649.4 667 63.4
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 8.8e-184 647.9 677 58.6
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.6e-183 646.4 656 59.6
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 7.5e-183 644.8 691 58.5
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 4.1e-181 639.0 620 63.1
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.6e-180 637.1 679 62.4
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.5e-178 629.8 666 63.8
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.6e-177 625.9 675 60.9
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.4e-175 619.4 703 54.3
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.7e-172 609.8 656 57.8
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 9.5e-170 601.3 668 60.5
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.8e-168 597.0 580 64.8
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.7e-166 589.3 535 71.4
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 6.6e-163 578.6 623 59.9
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.8e-153 546.6 680 59.0
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.0e-152 544.7 692 51.2
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.0e-148 530.4 671 50.5
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.2e-143 514.6 734 54.2
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.3e-142 511.1 533 60.4
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.1e-141 508.1 525 60.8
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.1e-139 499.2 562 52.3
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 2.8e-137 493.4 680 45.3
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.3e-134 484.6 515 62.7
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.1e-130 471.5 632 49.1
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.5e-127 461.1 456 54.2
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.3e-114 416.4 351 62.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 9.6e-114 415.2 512 52.9
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.2e-113 412.5 279 73.5
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.4e-104 384.8 477 58.9
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.4e-104 384.0 299 68.2
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.5e-103 381.3 481 54.3
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 7.6e-103 379.0 306 68.0
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.8e-83 314.7 221 82.4
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.5e-77 294.3 247 71.7
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.7e-76 290.8 290 66.6
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.0e-74 284.6 312 51.9
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 9.1e-72 275.8 287 55.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 2.9e-70 270.8 321 57.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.8e-70 270.4 174 75.3
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 1.9e-69 268.1 261 54.4
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.8e-65 253.4 291 51.2
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.0e-55 221.5 138 78.3
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 7.7e-55 219.5 310 43.9
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 8.9e-51 206.1 375 39.2
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.5e-50 205.3 228 52.2
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.8e-46 190.7 290 55.2
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-45 188.7 111 82.9
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 3.6e-44 184.1 111 82.0
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.2e-42 179.1 87 95.4
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 6.4e-41 173.3 167 57.5
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 5.8e-34 150.2 417 38.6
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.2e-33 148.3 182 49.5
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-32 144.8 323 36.5
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.2e-28 132.5 123 51.2
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.0e-27 127.5 98 65.3
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.2e-26 125.9 107 60.7
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-26 124.8 95 64.2
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.3e-25 122.5 98 64.3
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 1.7e-22 112.1 552 24.3
ECA238G4260 Erigeron canadensis HOM05D000871 ORTHO05D000770 4.4e-18 97.4 61 72.1
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 8.4e-17 93.2 69 62.3
CAN.G664.4 Capsicum annuum HOM05D003766 ORTHO05D004607 1.1e-16 92.8 68 64.7
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 4.1e-16 90.9 487 29.6
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.0e-14 86.3 150 36.7
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.3e-14 85.9 68 55.9
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 3.9e-14 84.3 69 55.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 5.6e-13 80.5 406 30.3
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.3e-13 80.1 68 58.8
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 1.2e-12 79.3 63 55.6
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.8e-11 75.5 58 56.9
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 5.2e-11 73.9 118 41.5
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 9.0e-11 73.2 169 33.7
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 6.4e-09 67.0 73 49.3
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-08 65.9 54 57.4
PRCOL_00004501 Prasinoderma coloniale HOM05D003766 ORTHO05D333463 4.2e-08 64.3 318 23.6
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 7.1e-08 63.5 68 54.4
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 1.6e-07 62.4 54 50.0
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 2.1e-07 62.0 59 45.8
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.1e-07 62.0 44 61.4
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 6.0e-07 60.5 49 51.0


User provided reference genes

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