Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 0.0e+00 1100.1 546 100.0
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 7.0e-293 1010.0 544 92.1
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 7.4e-234 813.9 543 75.3
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 9.6e-234 813.5 564 73.4
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 5.3e-232 807.7 542 73.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 1.5e-231 806.2 544 73.0
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 5.8e-231 804.3 546 73.8
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 5.8e-231 804.3 547 74.8
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 9.9e-231 803.5 550 73.1
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 6.4e-230 800.8 542 74.7
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 4.2e-229 798.1 545 72.7
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 2.1e-228 795.8 555 72.6
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.1e-228 795.8 539 73.5
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 7.9e-228 793.9 548 73.0
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 5.1e-227 791.2 544 72.8
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 6.7e-227 790.8 540 73.1
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.5e-226 789.6 539 72.7
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.5e-226 789.6 550 71.6
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 1.3e-225 786.6 543 72.9
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 2.1e-225 785.8 542 72.5
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 1.4e-224 783.1 545 71.9
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.4e-224 783.1 545 72.1
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 3.1e-224 781.9 541 72.3
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 6.9e-224 780.8 545 72.8
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 6.9e-224 780.8 536 72.9
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 9.0e-224 780.4 537 72.4
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 2.0e-223 779.2 549 71.6
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.7e-222 776.2 568 69.0
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.1e-221 773.5 543 70.9
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 2.3e-219 765.8 543 72.0
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 2.3e-219 765.8 541 69.7
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.9e-218 762.7 541 69.5
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 5.7e-218 761.1 543 69.8
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 1.6e-217 759.6 571 67.1
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 2.8e-217 758.8 545 70.6
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 4.8e-217 758.1 541 69.9
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.4e-216 755.7 541 68.9
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.2e-215 753.4 552 67.9
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 5.9e-215 751.1 560 68.0
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.3e-214 750.0 550 70.4
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 5.3e-208 728.0 543 65.6
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.2e-207 726.9 546 67.6
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 5.9e-207 724.5 540 66.9
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.0e-206 723.8 540 65.9
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 3.8e-206 721.8 540 66.5
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 3.8e-206 721.8 540 65.9
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 5.0e-206 721.5 545 66.6
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.9e-205 719.5 555 65.6
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 2.1e-204 716.1 495 72.3
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.4e-203 713.4 544 67.6
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 5.1e-203 711.4 545 65.9
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 8.8e-203 710.7 544 66.2
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 2.0e-202 709.5 502 72.1
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.6e-202 709.1 540 64.6
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 5.7e-202 708.0 542 65.5
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 9.7e-202 707.2 537 65.0
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 9.7e-202 707.2 537 65.9
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 6.3e-201 704.5 537 66.1
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.4e-200 702.6 537 65.9
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 9.1e-200 700.7 543 66.7
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.2e-199 700.3 540 64.1
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.5e-199 699.9 540 64.1
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 1.5e-199 699.9 543 66.5
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 5.9e-199 698.0 540 63.9
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 1.0e-198 697.2 547 65.3
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.3e-198 696.8 537 63.1
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 8.5e-198 694.1 537 64.1
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 2.5e-197 692.6 535 65.4
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.5e-197 692.6 521 64.9
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 4.7e-196 688.3 540 64.1
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 2.3e-195 686.0 538 63.6
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 6.7e-195 684.5 545 61.3
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 6.7e-195 684.5 542 63.8
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 6.3e-193 677.9 607 59.8
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 7.7e-191 671.0 556 62.9
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.8e-184 649.8 497 66.8
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 9.8e-178 627.5 500 65.2
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 4.1e-176 622.1 526 61.2
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 2.1e-172 609.8 539 58.4
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 8.8e-171 604.4 537 56.2
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 6.3e-169 598.2 544 58.3
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.4e-168 596.3 584 53.6
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 7.0e-168 594.7 553 59.7
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.0e-166 590.9 539 54.9
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.6e-164 583.6 535 54.6
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 9.8e-162 574.3 622 52.7
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 4.3e-157 558.9 535 51.6
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.0e-154 550.1 537 52.5
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 8.3e-153 544.7 549 52.5
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 3.6e-148 529.3 541 52.3
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 5.2e-147 525.4 300 80.7
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 9.9e-146 521.2 544 49.6
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.2e-135 487.6 249 94.0
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 1.3e-134 484.2 317 72.9
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 5.2e-131 472.2 301 72.8
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 9.9e-130 468.0 534 45.1
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 1.6e-124 450.7 302 72.2
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 2.4e-123 446.8 463 54.9
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 4.9e-121 439.1 569 46.4
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.0e-105 388.3 212 94.3
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.9e-104 384.0 212 92.9
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.2e-104 383.3 212 92.9
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 3.0e-102 376.7 573 41.9
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 8.7e-102 375.2 302 62.3
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 7.2e-88 328.9 655 30.8
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.2e-81 307.4 385 46.2
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 3.5e-74 283.5 498 34.7
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 9.4e-72 275.4 236 63.1
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 3.5e-66 256.9 587 31.3
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 3.4e-61 240.4 216 55.6
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 1.4e-59 235.0 208 60.1
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 1.3e-57 228.4 208 59.1
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.3e-54 217.6 170 62.4
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.8e-47 194.1 103 85.4
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.3e-30 137.9 201 42.8
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.2e-29 135.6 85 72.9
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 1.1e-22 112.5 133 52.6
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.2e-20 104.8 440 25.0
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.9e-16 91.7 218 28.4
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 4.7e-15 87.0 58 77.6
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 2.4e-14 84.7 47 83.0
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.3e-09 68.9 108 38.9
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 2.3e-09 68.2 31 90.3
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 2.3e-09 68.2 31 90.3
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 2.3e-09 68.2 31 90.3
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 2.3e-09 68.2 31 90.3
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 6.6e-09 66.6 31 87.1
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.3e-07 62.4 105 36.2
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 3.6e-07 60.8 56 58.9
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 1.4e-06 58.9 57 54.4
CAN.G93.25 Capsicum annuum HOM05D000544 ORTHO05D000137 9.0e-06 56.2 32 75.0


User provided reference genes

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