Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 0.0e+00 1616.7 964 100.0
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1369.8 968 82.3
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 0.0e+00 1366.7 968 80.6
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1366.3 971 79.9
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1364.7 968 80.6
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1320.8 856 84.5
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 0.0e+00 1182.2 804 79.1
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 0.0e+00 1175.2 969 71.6
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 0.0e+00 1107.0 955 67.1
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 6.5e-294 1014.2 818 68.1
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.3e-286 989.9 781 69.5
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 2.8e-284 982.2 816 66.8
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 3.2e-280 968.8 812 65.9
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 3.9e-278 961.8 819 64.0
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 2.5e-277 959.1 832 63.3
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 2.5e-277 959.1 797 66.4
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 7.3e-277 957.6 838 63.6
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 7.3e-277 957.6 793 65.8
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 3.5e-271 938.7 814 64.9
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 1.6e-268 929.9 805 62.7
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 2.2e-265 919.5 794 63.5
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 2.2e-265 919.5 801 63.9
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 2.7e-263 912.5 797 62.4
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 1.9e-261 906.4 807 60.8
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 3.3e-261 905.6 782 62.4
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 4.3e-261 905.2 805 61.2
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 9.5e-261 904.0 805 60.7
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 2.8e-260 902.5 796 62.4
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 3.6e-260 902.1 791 62.7
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.0e-258 896.3 777 62.9
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 9.9e-258 894.0 818 60.9
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 1.7e-257 893.3 806 59.8
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 8.4e-257 891.0 713 65.5
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 8.4e-257 891.0 809 61.1
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 1.7e-254 883.2 825 60.2
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.3e-254 882.9 811 59.9
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.5e-253 880.2 810 60.6
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 1.6e-252 876.7 794 61.6
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.4e-251 873.6 801 61.7
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 1.4e-251 873.6 808 59.5
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 1.2e-250 870.5 806 60.4
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 1.2e-250 870.5 808 58.7
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 6.4e-249 864.8 888 56.8
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 4.6e-247 858.6 822 60.2
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 3.0e-246 855.9 819 59.8
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 6.6e-246 854.7 791 59.3
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 1.9e-245 853.2 805 59.3
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 5.6e-245 851.7 797 59.7
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 9.6e-245 850.9 797 59.6
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 1.6e-244 850.1 793 61.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 9.9e-242 840.9 814 58.6
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 3.2e-240 835.9 854 55.0
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 9.3e-240 834.3 801 58.7
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.3e-238 829.7 716 62.2
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 8.7e-238 827.8 802 58.5
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 4.3e-237 825.5 815 57.7
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.4e-235 820.5 797 58.2
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 4.5e-234 815.5 809 57.5
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 5.8e-234 815.1 756 59.5
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 1.3e-233 813.9 808 55.9
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 1.9e-232 810.1 806 55.5
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.4e-232 809.7 798 58.3
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 2.1e-231 806.6 804 55.7
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 3.5e-231 805.8 807 58.0
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 3.9e-230 802.4 820 55.0
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 6.7e-230 801.6 815 55.5
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.9e-229 800.0 821 55.1
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 7.4e-229 798.1 801 55.7
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 2.1e-228 796.6 801 55.7
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 1.1e-227 794.3 804 55.5
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 5.3e-227 792.0 794 55.5
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 1.2e-226 790.8 814 54.1
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 1.5e-226 790.4 777 55.7
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 4.9e-225 785.4 790 56.1
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 6.5e-225 785.0 822 54.0
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 3.2e-224 782.7 821 54.1
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 4.6e-223 778.9 789 56.3
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 1.3e-222 777.3 799 55.4
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 1.6e-220 770.4 747 56.0
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 9.3e-216 754.6 808 54.6
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 5.0e-209 732.3 821 52.0
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.9e-208 730.3 802 54.2
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 1.4e-206 724.2 719 55.9
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 1.2e-202 711.1 588 66.2
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 1.7e-201 707.2 725 52.3
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 3.8e-185 652.9 619 58.8
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.9e-184 650.6 861 45.2
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.2e-181 641.3 803 48.1
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 3.4e-181 639.8 600 58.8
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 1.0e-177 628.2 714 51.7
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 2.1e-175 620.5 757 48.2
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.3e-169 600.5 663 51.7
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 1.2e-167 594.7 409 77.0
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.8e-167 593.6 452 68.1
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 4.3e-160 569.7 469 65.7
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 1.2e-159 568.2 578 53.8
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 3.6e-159 566.6 477 63.5
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 2.8e-151 540.4 783 43.8
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 3.6e-151 540.0 810 44.7
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.5e-149 534.6 408 67.9
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 1.7e-137 494.6 497 56.3
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 3.6e-98 364.0 786 34.1
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 2.0e-88 331.6 285 64.9
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 4.4e-88 330.5 470 42.1
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 7.4e-88 329.7 222 76.6
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 1.4e-81 308.9 677 32.8
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 8.8e-81 306.2 708 32.9
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 8.2e-79 299.7 975 29.2
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 4.5e-77 293.9 224 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.9e-75 288.5 708 31.6
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 3.1e-54 218.0 143 75.5
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 3.6e-50 204.5 297 44.4
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 2.4e-46 191.8 170 65.9
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 2.1e-34 152.1 119 63.0
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 2.9e-31 141.7 220 41.4
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 3.9e-28 131.3 140 59.3
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 7.8e-21 107.1 63 76.2
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 2.8e-18 98.6 107 57.0
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.2e-16 93.2 88 63.6
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 6.4e-15 87.4 137 41.6
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 1.4e-14 86.3 724 24.4
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 6.2e-10 70.9 54 66.7
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 6.2e-10 70.9 54 66.7
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 1.1e-09 70.1 60 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.7e-07 62.8 69 47.8
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 7.1e-06 57.4 38 68.4


User provided reference genes

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