Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1965.7 1061 100.0
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1610.5 954 85.8
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1602.8 990 83.1
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1595.5 1011 81.9
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1590.5 941 85.9
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 0.0e+00 1407.5 812 88.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1346.3 974 72.7
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1293.1 936 71.7
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 7.4e-299 1030.8 1082 54.2
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 2.6e-283 979.2 1001 55.1
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 3.5e-280 968.8 1072 50.8
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.8e-279 965.3 937 56.2
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 3.2e-278 962.2 1053 53.0
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 9.8e-275 950.7 971 54.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 5.0e-271 938.3 934 56.1
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.0e-268 930.6 1097 49.4
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 2.0e-267 926.4 1071 49.5
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.1e-265 920.6 986 52.7
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.7e-261 905.2 972 52.5
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.2e-248 864.0 944 51.6
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 4.6e-248 862.1 1065 46.6
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.2e-245 854.0 934 51.6
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 2.1e-245 853.2 933 51.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 4.4e-243 845.5 1057 47.4
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 9.9e-243 844.3 1058 48.4
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 4.9e-242 842.0 966 50.5
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.9e-241 840.1 1041 49.7
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 4.0e-236 822.4 1059 47.8
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.7e-232 809.7 1127 45.0
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 6.0e-232 808.5 1121 44.7
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 4.0e-228 795.8 751 58.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 7.9e-224 781.6 979 48.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.4e-220 770.0 1094 43.3
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 6.9e-220 768.5 1088 44.4
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 5.8e-219 765.4 1092 44.7
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 5.8e-219 765.4 1073 43.5
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 2.9e-218 763.1 1094 44.0
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 2.9e-218 763.1 1095 43.9
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 2.1e-213 746.9 1095 42.7
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 5.3e-212 742.3 1175 41.7
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.0e-207 728.0 1086 41.7
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 1.3e-207 727.6 1057 43.2
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 6.9e-204 715.3 1077 42.5
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 7.4e-198 695.3 1084 40.9
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 2.2e-197 693.7 1001 43.0
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 1.2e-195 688.0 1089 41.0
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 8.5e-194 681.8 1102 40.3
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 8.5e-194 681.8 1078 42.3
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 5.1e-191 672.5 1071 40.1
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.3e-186 657.9 1124 39.7
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 4.7e-184 649.4 962 41.7
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.3e-183 647.1 1010 42.1
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 8.8e-183 645.2 767 48.8
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.5e-182 644.4 1051 40.9
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.8e-180 637.5 943 42.4
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.5e-179 632.9 1123 38.3
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 6.5e-178 629.0 938 41.7
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 5.5e-177 625.9 1103 37.6
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 3.0e-175 620.2 1097 37.8
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.2e-173 614.0 1044 39.8
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.1e-172 609.8 937 40.3
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 4.5e-171 606.3 954 41.6
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 2.9e-170 603.6 711 49.9
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 5.2e-167 592.8 998 39.8
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.3e-165 588.2 957 39.7
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 2.4e-164 583.9 1056 37.2
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.9e-162 577.0 894 40.7
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 4.2e-161 573.2 933 40.2
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.8e-160 570.5 933 40.1
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 4.7e-160 569.7 921 40.5
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.0e-158 564.3 968 38.6
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.1e-156 558.5 936 38.2
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 1.4e-156 558.1 933 39.9
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 5.4e-156 556.2 1037 36.6
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 1.9e-153 547.7 921 39.0
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.3e-153 546.6 932 37.7
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 5.6e-153 546.2 932 37.8
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 5.6e-153 546.2 704 46.0
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.8e-151 541.2 958 38.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 3.0e-151 540.4 936 37.5
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 3.5e-147 526.9 972 38.4
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 5.0e-146 523.1 1031 36.2
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 5.6e-145 519.6 1001 37.1
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 8.3e-141 505.8 1063 36.3
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 4.1e-140 503.4 759 40.1
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 6.0e-139 499.6 1060 33.8
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 7.6e-126 456.1 568 47.5
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 3.5e-123 447.2 689 40.1
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.4e-108 398.7 741 36.6
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.2e-94 352.4 947 30.6
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 5.1e-90 337.0 656 36.9
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.8e-80 304.7 304 53.3
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 5.5e-76 290.4 259 56.4
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 3.9e-74 284.3 381 44.9
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 7.0e-71 273.5 565 35.0
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.9e-68 265.4 333 43.5
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.8e-58 232.3 825 27.3
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 8.3e-48 196.8 383 37.1
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 7.7e-46 190.3 688 27.2
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.2e-44 184.5 221 47.1
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 5.9e-38 164.1 325 36.9
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 5.9e-38 164.1 202 46.5
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.5e-36 159.5 393 31.0
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.1e-34 151.8 404 31.2
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 9.2e-31 140.2 697 24.0
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 8.6e-29 133.7 264 36.4
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.1e-28 133.3 662 25.7
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 1.7e-24 119.4 267 32.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 9.2e-23 113.6 845 22.0
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 8.6e-21 107.1 118 46.6
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 2.5e-20 105.5 113 49.6
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.3e-20 104.0 85 62.4
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 9.2e-15 87.0 59 64.4
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 4.6e-14 84.7 96 49.0
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.3e-13 83.2 62 66.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 3.9e-13 81.6 327 27.5
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.5e-12 79.7 190 35.3
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.5e-12 79.7 113 40.7
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.2e-11 76.6 139 52.5
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.1e-11 75.9 78 46.2
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.6e-11 75.1 171 25.7
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.6e-11 75.1 78 44.9
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 4.7e-11 74.7 74 48.6
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 2.4e-10 72.4 81 51.9
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 2.6e-09 68.9 193 33.2
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.7e-08 66.2 44 65.9
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 3.8e-08 65.1 185 30.8
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 1.1e-07 63.5 135 31.1
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 1.1e-07 63.5 44 68.2
Cc08_g07630 Coffea canephora HOM05D006523 ORTHO05D008212 1.2e-06 60.1 67 46.3
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 2.1e-06 59.3 58 53.4


User provided reference genes

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