Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 1.8e-43 178.7 82 100.0
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 5.3e-27 124.0 60 90.0
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 2.2e-25 118.6 60 85.0
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.2e-25 118.6 60 85.0
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 6.4e-25 117.1 60 83.3
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 8.4e-25 116.7 56 89.3
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 1.3e-17 92.8 62 61.3
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 1.4e-16 89.4 56 64.3
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.9e-16 89.0 61 59.0
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 3.2e-16 88.2 56 69.6
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 7.1e-16 87.0 54 66.7
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.2e-15 86.3 56 62.5
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.1e-15 85.5 57 70.2
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 3.5e-15 84.7 56 64.3
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 3.5e-15 84.7 56 58.9
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 3.5e-15 84.7 56 62.5
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 3.5e-15 84.7 56 62.5
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 7.9e-15 83.6 56 66.1
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 7.9e-15 83.6 57 63.2
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.3e-14 82.8 59 57.6
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.8e-14 82.4 59 54.2
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 2.3e-14 82.0 62 59.7
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 2.3e-14 82.0 56 58.9
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 2.3e-14 82.0 56 55.4
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 3.0e-14 81.6 57 61.4
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 3.0e-14 81.6 57 61.4
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 3.0e-14 81.6 56 60.7
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.0e-14 81.6 56 60.7
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 5.1e-14 80.9 56 58.9
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 6.7e-14 80.5 56 60.7
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 8.7e-14 80.1 80 45.0
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 1.1e-13 79.7 56 58.9
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.1e-13 79.7 57 57.9
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.1e-13 79.7 55 60.0
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 1.1e-13 79.7 56 57.1
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 1.5e-13 79.3 56 58.9
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.5e-13 79.3 58 53.4
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 1.9e-13 79.0 59 52.5
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.5e-13 78.6 58 55.2
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 4.3e-13 77.8 56 58.9
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 4.3e-13 77.8 59 50.8
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.7e-13 77.4 56 55.4
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 5.7e-13 77.4 56 55.4
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 5.7e-13 77.4 56 55.4
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 7.4e-13 77.0 57 57.9
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 9.6e-13 76.6 56 58.9
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 1.3e-12 76.3 56 58.9
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.3e-12 76.3 56 58.9
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.3e-12 76.3 62 54.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 1.3e-12 76.3 62 54.8
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-12 76.3 60 58.3
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 1.3e-12 76.3 50 66.0
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 1.3e-12 76.3 56 55.4
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.6e-12 75.9 57 56.1
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.6e-12 75.9 56 55.4
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 2.1e-12 75.5 56 51.8
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 2.1e-12 75.5 56 55.4
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 2.8e-12 75.1 56 55.4
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 2.8e-12 75.1 56 57.1
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.8e-12 75.1 62 53.2
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 2.8e-12 75.1 56 53.6
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 4.8e-12 74.3 56 53.6
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 4.8e-12 74.3 56 57.1
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 6.2e-12 73.9 56 57.1
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 6.2e-12 73.9 56 51.8
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 8.2e-12 73.6 55 56.4
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 8.2e-12 73.6 51 58.8
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 8.2e-12 73.6 56 50.0
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 1.8e-11 72.4 56 53.6
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 2.4e-11 72.0 59 52.5
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 3.1e-11 71.6 56 50.0
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 3.1e-11 71.6 56 55.4
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 5.3e-11 70.9 57 52.6
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 5.3e-11 70.9 57 52.6
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 6.9e-11 70.5 50 56.0
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 6.9e-11 70.5 62 48.4
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 6.9e-11 70.5 73 41.1
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 6.9e-11 70.5 56 50.0
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 9.0e-11 70.1 52 53.8
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.2e-10 69.7 52 53.8
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 3.4e-10 68.2 57 52.6
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 5.8e-10 67.4 57 50.9
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 7.6e-10 67.0 76 44.7
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 2.2e-09 65.5 52 51.9
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.2e-09 65.5 59 50.8
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 3.8e-09 64.7 52 48.1
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 5.0e-09 64.3 51 54.9
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 8.4e-09 63.5 50 48.0
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.4e-08 62.8 52 48.1
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 1.9e-08 62.4 41 53.7
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 9.3e-08 60.1 64 46.9
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 1.2e-07 59.7 41 53.7
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 1.2e-07 59.7 41 51.2
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.6e-07 59.3 41 53.7
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 2.1e-07 58.9 41 48.8
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 4.6e-07 57.8 37 54.1
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 6.1e-07 57.4 38 52.6
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 7.9e-07 57.0 37 51.4
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 1.0e-06 56.6 37 51.4
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 1.0e-06 56.6 37 51.4
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 1.0e-06 56.6 37 51.4
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 1.0e-06 56.6 37 51.4
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 1.0e-06 56.6 37 51.4
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.8e-06 55.8 63 36.5
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 2.3e-06 55.5 39 51.3
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 3.9e-06 54.7 56 41.1


User provided reference genes

Program Settings