Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 3.4e-169 598.2 295 100.0
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 5.7e-148 527.7 299 90.0
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 7.2e-119 431.0 265 83.4
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 2.0e-113 412.9 301 72.1
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 9.5e-111 404.1 293 71.7
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 9.8e-108 394.0 213 93.9
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 1.9e-103 379.8 306 68.3
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 6.2e-102 374.8 305 65.9
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 1.1e-101 374.0 301 67.4
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 1.7e-99 366.7 297 65.3
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 4.1e-98 362.1 300 63.3
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 3.5e-97 359.0 297 63.3
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 3.0e-96 355.9 231 75.8
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 5.1e-96 355.1 258 69.0
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 4.3e-95 352.1 301 62.5
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 4.3e-95 352.1 298 62.1
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 9.5e-95 350.9 280 64.6
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 9.5e-95 350.9 305 63.3
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 9.5e-95 350.9 301 63.8
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 1.2e-94 350.5 277 65.3
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 1.2e-94 350.5 252 69.0
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 2.8e-94 349.4 237 72.6
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 1.4e-93 347.1 258 67.4
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 1.4e-93 347.1 215 74.4
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 2.3e-93 346.3 269 66.5
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 2.3e-93 346.3 253 68.8
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 5.2e-93 345.1 289 62.6
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 8.9e-93 344.4 263 66.9
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.2e-92 344.0 292 62.3
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 1.5e-92 343.6 281 63.7
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 1.5e-92 343.6 299 61.5
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 2.6e-92 342.8 265 67.2
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 2.6e-92 342.8 275 63.6
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 2.6e-92 342.8 295 62.4
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 3.4e-92 342.4 263 66.5
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 5.8e-92 341.7 229 72.9
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 7.5e-92 341.3 241 68.9
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 9.9e-92 340.9 236 72.9
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 1.3e-91 340.5 291 61.5
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 1.7e-91 340.1 266 66.5
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 2.2e-91 339.7 288 61.5
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 2.2e-91 339.7 263 67.3
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 3.7e-91 339.0 297 62.0
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 3.7e-91 339.0 263 67.7
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 4.9e-91 338.6 263 66.9
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 6.4e-91 338.2 308 62.0
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 1.1e-90 337.4 237 72.2
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 2.4e-90 336.3 214 77.1
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 9.2e-90 334.3 302 59.9
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 1.2e-89 334.0 202 78.7
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 1.6e-89 333.6 313 57.2
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 3.5e-89 332.4 242 66.9
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 3.5e-89 332.4 306 58.8
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 6.0e-89 331.6 227 73.1
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 1.0e-88 330.9 230 71.3
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 1.3e-88 330.5 214 76.6
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 2.3e-88 329.7 286 61.2
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 2.3e-88 329.7 281 63.3
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 5.1e-88 328.6 254 68.1
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 6.6e-88 328.2 291 60.8
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 8.6e-88 327.8 205 76.6
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 8.6e-88 327.8 270 63.3
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.1e-87 327.4 206 75.2
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 1.9e-87 326.6 226 70.8
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 1.9e-87 326.6 242 69.0
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 4.3e-87 325.5 269 62.8
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 4.3e-87 325.5 290 61.4
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 5.6e-87 325.1 206 74.8
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 7.3e-87 324.7 210 75.2
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 1.2e-86 323.9 211 74.9
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 8.1e-86 321.2 222 70.7
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 1.1e-85 320.9 249 68.3
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 1.4e-85 320.5 227 70.9
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 1.4e-85 320.5 226 70.4
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 1.8e-85 320.1 219 71.2
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 6.8e-85 318.2 227 70.5
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 8.9e-85 317.8 293 59.0
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 1.2e-84 317.4 254 65.0
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 1.5e-84 317.0 216 73.6
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 3.4e-84 315.8 218 71.6
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 6.4e-83 311.6 206 73.8
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 9.2e-82 307.8 233 67.8
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 1.5e-79 300.4 297 56.6
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 2.5e-79 299.7 195 72.8
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 1.2e-78 297.4 184 81.0
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 1.2e-78 297.4 214 68.2
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 6.2e-78 295.0 251 61.4
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 6.2e-78 295.0 235 64.3
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 5.3e-77 292.0 199 69.3
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 2.1e-73 280.0 167 82.6
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 4.3e-71 272.3 224 63.4
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 7.3e-71 271.6 261 55.6
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 1.4e-69 267.3 192 66.7
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 1.8e-69 266.9 204 66.7
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 5.3e-69 265.4 202 63.9
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 4.5e-68 262.3 270 55.6
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 1.7e-67 260.4 220 56.8
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 1.9e-66 256.9 218 62.4
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 3.2e-66 256.1 250 54.0
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 1.6e-65 253.8 292 50.7
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 1.0e-64 251.1 164 79.9
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 9.6e-63 244.6 205 62.0
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 3.2e-58 229.6 278 50.0
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 3.3e-55 219.5 138 81.2
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 2.1e-54 216.9 158 69.0
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 7.1e-50 201.8 136 77.2
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 8.7e-48 194.9 133 75.9
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 1.3e-46 191.0 108 88.9
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 1.3e-46 191.0 205 55.1
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 6.5e-43 178.7 185 48.6
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 6.7e-40 168.7 182 44.5
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 2.0e-39 167.2 309 41.7
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 1.1e-37 161.4 227 40.1
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 7.2e-34 148.7 200 42.0
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 1.8e-32 144.1 126 54.0
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 6.7e-32 142.1 160 49.4
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 1.7e-27 127.5 84 73.8
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 2.0e-23 114.0 197 34.5
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 2.6e-23 113.6 91 65.9
Haze_21850 Corylus avellana HOM05D006435 ORTHO05D008262 5.7e-15 85.9 127 47.2
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 2.8e-14 83.6 76 60.5
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 1.6e-09 67.8 188 28.7
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 1.0e-08 65.1 113 31.0
Medtr1g101310 Medicago truncatula HOM05D000659 ORTHO05D000505 1.0e-08 65.1 185 29.7
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 2.0e-07 60.8 183 30.6
PGR004G1090 Punica granatum HOM05D000659 ORTHO05D000505 2.6e-07 60.5 145 29.7
AL1G24340 Arabidopsis lyrata HOM05D000659 ORTHO05D000505 3.4e-07 60.1 146 33.6
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 4.4e-07 59.7 150 32.7
Potri.006G086300 Populus trichocarpa HOM05D000659 ORTHO05D000505 4.4e-07 59.7 142 28.9
Cc06_g02550 Coffea canephora HOM05D000659 ORTHO05D000505 5.7e-07 59.3 184 28.8
Glyma.15G009000 Glycine max HOM05D000659 ORTHO05D000505 5.7e-07 59.3 175 30.3
A10p29020 Brassica napus HOM05D000659 ORTHO05D000505 7.5e-07 58.9 150 32.7
BraA10t44950Z Brassica rapa HOM05D000659 ORTHO05D000505 7.5e-07 58.9 150 32.7
unitig_26.g9193 Utricularia gibba HOM05D000659 ORTHO05D000505 7.5e-07 58.9 173 26.6
Cre03.g144084 Chlamydomonas reinhardtii HOM05D000659 ORTHO05D000505 9.8e-07 58.5 149 30.2
Manes.09G093300 Manihot esculenta HOM05D000659 ORTHO05D000505 9.8e-07 58.5 140 30.0
Rhsim04G0157700 Rhododendron simsii HOM05D000659 ORTHO05D000505 9.8e-07 58.5 146 29.5
Hund04948 Selenicereus undatus HOM05D000659 ORTHO05D000505 9.8e-07 58.5 162 29.0
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 9.8e-07 58.5 167 26.9
BcaC06g32457 Brassica carinata HOM05D000659 ORTHO05D000505 1.3e-06 58.2 150 32.0
PGSC0003DMG400014321 Solanum tuberosum HOM05D000659 ORTHO05D000505 1.3e-06 58.2 154 29.9
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 1.3e-06 58.2 146 29.5
Atru.chr1.3006 Acer truncatum HOM05D000659 ORTHO05D000505 1.7e-06 57.8 173 30.1
AUR62001774 Chenopodium quinoa HOM05D000659 ORTHO05D000505 1.7e-06 57.8 148 29.7
A10p29010 Brassica napus HOM05D000659 ORTHO05D000505 2.2e-06 57.4 148 32.4
C09p69380 Brassica napus HOM05D000659 ORTHO05D000505 2.2e-06 57.4 148 32.4
BolC9t59681H Brassica oleracea HOM05D000659 ORTHO05D000505 2.2e-06 57.4 148 33.1
BolC9t59682H Brassica oleracea HOM05D000659 ORTHO05D000505 2.2e-06 57.4 148 32.4
Ca_10788_v3 Cicer arietinum L. HOM05D000659 ORTHO05D000505 2.2e-06 57.4 168 29.2
HanXRQChr05g0134971 Helianthus annuus HOM05D000659 ORTHO05D000505 2.2e-06 57.4 148 30.4
Phvul.005G176900 Phaseolus vulgaris HOM05D000659 ORTHO05D000505 2.2e-06 57.4 176 29.5
Psat5g301800 Pisum sativum HOM05D000659 ORTHO05D000505 2.2e-06 57.4 150 32.0
Solyc03g026080.3 Solanum lycopersicum HOM05D000659 ORTHO05D000505 2.2e-06 57.4 154 29.9
Sopen03g004920 Solanum pennellii HOM05D000659 ORTHO05D000505 2.2e-06 57.4 154 29.9
Lj3g0014536 Lotus japonicus HOM05D000659 ORTHO05D000505 2.8e-06 57.0 176 29.5
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 2.8e-06 57.0 153 27.5
CSS0002006 Camellia sinensis var. sinensis HOM05D000659 ORTHO05D000505 3.7e-06 56.6 187 30.5
CAN.G769.7 Capsicum annuum HOM05D000659 ORTHO05D000505 3.7e-06 56.6 154 29.9
COL.COLO4_05258 Corchorus olitorius HOM05D000659 ORTHO05D000505 3.7e-06 56.6 148 30.4
Duzib106G0001 Durio zibethinus HOM05D000659 ORTHO05D000505 3.7e-06 56.6 140 30.7
FAN26G1534 Fragaria x ananassa HOM05D000659 ORTHO05D000505 3.7e-06 56.6 137 28.5
Gohir.D09G150900 Gossypium hirsutum HOM05D000659 ORTHO05D000505 3.7e-06 56.6 140 30.0
Gorai.006G172200 Gossypium raimondii HOM05D000659 ORTHO05D000505 3.7e-06 56.6 140 30.0
Duzib068G1094 Durio zibethinus HOM05D000659 ORTHO05D000505 4.8e-06 56.2 148 29.1
ECA232G2175 Erigeron canadensis HOM05D000659 ORTHO05D000505 4.8e-06 56.2 162 29.6
Eucgr.A01271 Eucalyptus grandis HOM05D000659 ORTHO05D000505 4.8e-06 56.2 137 30.7
Nn2g12017 Nelumbo nucifera HOM05D000659 ORTHO05D000505 4.8e-06 56.2 150 32.0
Rhsim05G0193700 Rhododendron simsii HOM05D000659 ORTHO05D000505 4.8e-06 56.2 167 28.7
BcaB01g06352 Brassica carinata HOM05D000659 ORTHO05D000505 6.3e-06 55.8 152 32.2
Thhalv10014021m.g Eutrema salsugineum HOM05D000659 ORTHO05D000505 6.3e-06 55.8 150 32.0
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 6.3e-06 55.8 153 27.5
HPP92_026923 Vanilla planifolia HOM05D000659 ORTHO05D000505 6.3e-06 55.8 149 29.5
AUR62009562 Chenopodium quinoa HOM05D000659 ORTHO05D000505 8.3e-06 55.5 148 29.1
Dinv04177 Davidia involucrata HOM05D000659 ORTHO05D000505 8.3e-06 55.5 178 28.7
LjContig00238g0018309 Lotus japonicus HOM05D000659 ORTHO05D000505 8.3e-06 55.5 153 28.8
Medtr2g103600 Medicago truncatula HOM05D000659 ORTHO05D000505 8.3e-06 55.5 150 30.7
Pp3c2_10440 Physcomitrium patens HOM05D000659 ORTHO05D000505 8.3e-06 55.5 155 29.0
PGR042G1240 Punica granatum HOM05D000659 ORTHO05D000505 8.3e-06 55.5 162 28.4
vmacro20163 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 8.3e-06 55.5 159 30.2
VMungo1080G0290 Vigna mungo HOM05D000659 ORTHO05D000505 8.3e-06 55.5 176 30.1


User provided reference genes

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