Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 3.1e-231 804.7 385 100.0
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.8e-209 730.7 403 86.6
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.1e-207 726.5 403 85.9
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.2e-206 723.0 403 85.6
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.0e-206 720.7 403 85.6
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 4.0e-194 681.4 402 80.6
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 2.0e-193 679.1 402 80.6
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.4e-193 678.3 402 80.8
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.8e-186 656.0 409 77.5
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.2e-175 618.2 395 71.9
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.6e-172 607.8 395 72.4
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.8e-170 602.8 400 72.2
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.0e-169 599.4 394 71.3
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.6e-169 599.0 400 70.2
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.0e-168 597.0 395 69.6
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.3e-168 596.7 395 70.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.1e-167 593.6 400 71.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.1e-167 593.6 400 71.0
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.9e-167 592.8 400 68.8
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.5e-167 592.4 395 70.9
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.1e-166 589.3 402 69.4
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 3.0e-165 585.5 394 69.0
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 8.7e-165 583.9 397 68.3
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 8.7e-165 583.9 405 71.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-164 583.6 396 70.2
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.3e-163 580.1 394 69.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 8.2e-163 577.4 402 68.9
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.1e-162 575.1 395 67.8
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.1e-162 575.1 399 67.9
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.2e-161 573.5 393 69.2
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 5.9e-161 571.2 399 65.2
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.0e-160 568.2 384 69.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.2e-159 564.3 394 68.3
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 9.3e-159 563.9 395 68.4
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.6e-158 563.1 395 68.1
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.0e-157 558.9 400 66.2
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 3.9e-157 558.5 397 66.8
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.1e-156 557.0 397 66.5
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.1e-156 557.0 397 66.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.1e-156 557.0 397 66.5
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.9e-156 556.2 399 67.2
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.9e-156 556.2 397 66.5
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 7.4e-156 554.3 396 66.7
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.3e-155 553.5 396 67.7
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 2.2e-155 552.7 398 65.6
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 3.7e-155 552.0 395 66.6
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.4e-154 550.1 398 65.6
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.0e-153 546.2 409 65.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 4.5e-153 545.0 396 64.9
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 7.7e-153 544.3 395 65.1
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.9e-152 542.3 396 64.4
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 8.5e-152 540.8 400 65.0
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.1e-151 540.4 396 65.7
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 3.2e-151 538.9 400 63.5
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 4.2e-151 538.5 396 64.1
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 7.2e-151 537.7 401 64.1
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.7e-150 535.8 401 64.1
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 3.6e-150 535.4 395 66.6
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.8e-149 533.1 396 65.2
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.3e-149 532.7 401 62.3
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.3e-149 532.7 404 62.1
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 3.0e-149 532.3 395 63.5
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.0e-149 532.3 400 62.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.9e-149 531.9 393 63.6
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.5e-148 530.0 400 63.8
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.0e-148 529.6 395 64.3
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 9.7e-148 527.3 403 62.3
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.7e-147 526.6 400 61.5
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.8e-147 525.8 392 63.3
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.1e-146 522.3 385 65.2
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.1e-146 522.3 385 65.2
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 5.3e-146 521.5 384 63.3
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 2.6e-145 519.2 403 62.5
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.5e-145 518.5 410 59.8
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 7.7e-145 517.7 400 60.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.3e-144 516.9 392 62.0
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.7e-144 516.5 400 60.0
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.2e-144 516.2 391 61.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 5.0e-144 515.0 400 59.0
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 8.5e-144 514.2 401 60.8
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 7.2e-143 511.1 401 59.4
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 9.4e-143 510.8 396 62.6
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.6e-142 510.0 400 60.2
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.1e-142 509.6 383 63.4
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 4.7e-142 508.4 385 61.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.1e-142 508.1 393 61.1
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.0e-141 505.8 393 60.6
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 5.2e-141 505.0 388 60.3
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 5.2e-141 505.0 388 60.8
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 8.8e-141 504.2 396 60.4
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 8.8e-141 504.2 386 62.7
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.1e-140 503.8 392 60.5
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.5e-140 503.4 396 59.1
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.5e-140 503.4 384 62.5
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-139 500.0 372 64.5
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-139 500.0 372 64.5
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.2e-139 499.6 384 61.2
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.8e-139 499.2 384 61.2
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 6.3e-139 498.0 395 59.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 8.2e-139 497.7 393 59.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.1e-138 495.7 394 60.9
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 5.3e-138 495.0 384 60.9
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.1e-138 494.2 397 59.4
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 4.5e-137 491.9 394 59.4
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 4.5e-137 491.9 402 58.5
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 4.5e-137 491.9 384 60.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 5.5e-135 485.0 401 57.9
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 5.5e-135 485.0 384 58.6
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 5.5e-135 485.0 403 58.3
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 9.4e-135 484.2 407 56.8
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 8.0e-134 481.1 408 55.6
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.8e-133 479.9 394 58.4
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 8.8e-133 477.6 409 55.5
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.7e-131 473.4 394 58.9
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.5e-128 461.5 391 56.8
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.9e-127 459.9 411 54.3
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.8e-120 435.6 410 54.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 8.0e-118 427.9 384 53.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 5.4e-114 415.2 385 52.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.3e-111 406.0 402 51.7
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.6e-110 403.7 400 51.2
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 8.0e-110 401.4 407 51.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.2e-105 387.5 409 47.7
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.2e-105 387.5 398 51.0
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.0e-104 382.9 400 49.5
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.2e-102 375.2 406 46.6
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.9e-101 371.3 375 50.9
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.6e-97 360.5 396 48.2
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 2.3e-93 346.7 405 43.5
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.7e-91 340.5 409 43.5
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.5e-87 326.6 272 58.5
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 7.3e-87 325.1 398 45.0
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.6e-86 322.8 406 44.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.4e-85 320.9 411 41.4
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 5.8e-84 315.5 383 44.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.4e-83 311.6 395 45.8
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 7.1e-82 308.5 376 44.9
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 3.3e-79 299.7 383 42.8
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.2e-74 282.7 395 41.5
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 7.8e-73 278.5 386 44.3
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.5e-71 273.5 228 59.6
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 7.6e-68 261.9 391 39.1
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.7e-51 207.6 156 60.9
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.5e-49 199.9 186 50.5
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.3e-48 197.2 421 31.8
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-35 154.8 119 61.3
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.4e-34 148.7 387 27.1
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 3.7e-30 136.7 154 46.8
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 1.1e-29 135.2 89 70.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.6e-28 130.6 302 29.8
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 5.9e-28 129.4 78 73.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 2.8e-22 110.5 411 26.5
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 5.0e-11 73.2 45 73.3
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 9.4e-10 68.9 47 61.7
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 7.5e-07 59.3 42 71.4


User provided reference genes

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