Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.4e-204 715.3 367 100.0
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.8e-183 646.0 367 90.7
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.5e-177 626.3 387 85.3
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 3.4e-174 615.1 403 80.6
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 2.6e-158 562.4 374 80.7
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 7.1e-156 554.3 369 79.1
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.7e-144 515.0 311 86.2
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 6.0e-139 498.0 360 73.6
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 1.3e-138 496.9 361 73.4
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 3.9e-138 495.4 362 73.5
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 2.5e-137 492.7 363 72.5
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 1.3e-136 490.3 356 71.9
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.3e-136 490.3 362 72.9
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 3.1e-135 485.7 367 71.1
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 1.7e-133 479.9 367 72.5
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 1.7e-133 479.9 353 71.4
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.1e-132 477.2 361 71.5
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.9e-132 476.5 341 73.6
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.6e-131 473.4 358 71.8
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 2.1e-131 473.0 365 68.8
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.1e-129 467.2 352 69.3
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 3.3e-129 465.7 366 68.6
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 3.7e-128 462.2 366 69.1
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 4.0e-127 458.8 357 69.2
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 9.0e-127 457.6 355 70.1
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 3.4e-126 455.7 361 68.1
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.4e-124 450.3 296 78.0
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 1.9e-124 449.9 307 73.9
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.9e-124 449.9 296 78.4
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.2e-124 449.1 296 78.0
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 4.2e-124 448.7 333 70.0
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 9.3e-124 447.6 283 79.9
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.2e-123 447.2 292 77.1
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 2.1e-123 446.4 369 65.0
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.0e-122 444.1 320 71.6
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.3e-122 443.0 362 66.0
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 3.0e-122 442.6 350 65.4
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 3.9e-122 442.2 326 70.2
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 5.1e-122 441.8 337 68.0
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 5.1e-122 441.8 298 75.5
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 6.7e-122 441.4 332 69.6
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 8.7e-122 441.0 337 68.0
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 8.7e-122 441.0 337 68.0
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 8.7e-122 441.0 327 69.7
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 8.7e-122 441.0 304 73.7
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 8.7e-122 441.0 313 70.3
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 1.1e-121 440.7 316 73.1
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 1.1e-121 440.7 364 67.6
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.5e-121 440.3 322 70.5
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.9e-121 439.9 359 66.6
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 1.9e-121 439.9 305 73.4
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 2.5e-121 439.5 322 70.5
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 5.6e-121 438.3 330 68.5
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 5.6e-121 438.3 318 70.4
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 7.4e-121 438.0 359 65.5
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 7.4e-121 438.0 370 63.2
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 2.1e-120 436.4 333 68.8
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.8e-120 436.0 307 72.0
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 3.7e-120 435.6 292 76.4
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 4.8e-120 435.3 311 72.0
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.2e-120 434.9 305 72.5
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.4e-119 433.7 307 72.0
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.8e-119 433.3 320 70.0
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.4e-119 433.0 341 68.3
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 3.1e-119 432.6 324 70.4
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 6.9e-119 431.4 354 64.4
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 6.9e-119 431.4 303 72.3
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 9.0e-119 431.0 362 65.5
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 2.6e-118 429.5 331 67.1
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 3.4e-118 429.1 334 67.1
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 4.5e-118 428.7 289 75.1
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 4.9e-117 425.2 322 69.3
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 8.4e-117 424.5 395 59.5
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 9.3e-116 421.0 336 66.7
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 1.3e-114 417.2 266 80.8
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 5.1e-114 415.2 313 70.0
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 2.1e-112 409.8 344 61.6
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 3.1e-111 406.0 316 65.2
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 3.4e-110 402.5 267 74.9
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 5.5e-108 395.2 314 64.6
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.1e-107 393.3 313 62.9
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 5.1e-106 388.7 422 56.2
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 5.1e-106 388.7 402 59.7
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.5e-105 387.1 293 70.6
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 3.4e-102 375.9 510 46.3
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 4.5e-102 375.6 363 60.1
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 5.9e-102 375.2 363 58.1
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.2e-99 367.5 520 44.6
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 1.8e-98 363.6 531 44.3
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.5e-97 360.5 264 66.3
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 6.9e-95 351.7 272 70.6
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.6e-91 340.5 233 74.7
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.1e-91 340.1 287 62.0
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.0e-90 337.8 236 72.0
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 1.5e-89 334.0 277 66.8
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 2.8e-88 329.7 269 68.0
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.7e-88 329.3 232 71.1
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 6.3e-88 328.6 278 58.6
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 6.5e-85 318.5 303 55.8
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 8.5e-85 318.2 284 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 4.7e-83 312.4 284 56.0
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 4.5e-78 295.8 184 80.4
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.3e-60 236.1 205 66.3
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.7e-56 224.2 191 59.2
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.7e-56 224.2 142 77.5
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.1e-55 221.5 360 43.9
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.4e-55 221.1 170 64.1
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 7.0e-55 218.8 307 41.0
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 5.6e-52 209.1 197 59.4
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 3.7e-48 196.4 202 55.0
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 9.2e-47 191.8 199 48.7
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 4.6e-46 189.5 311 37.3
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 7.8e-38 162.2 216 44.4
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 5.2e-34 149.4 209 42.1
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 6.4e-32 142.5 101 71.3
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 5.4e-31 139.4 104 64.4
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 9.9e-25 118.6 75 76.0
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 9.9e-25 118.6 75 76.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 4.9e-24 116.3 90 64.4
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.5e-20 104.8 150 50.0
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 1.8e-18 97.8 77 58.4
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 9.9e-17 92.0 64 71.9
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.4e-15 88.2 135 42.2
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 4.6e-14 83.2 55 70.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.3e-13 81.6 155 33.5
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.1e-12 78.6 58 69.0
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.6e-12 76.3 58 67.2
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.6e-12 76.3 58 67.2
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.6e-12 76.3 58 67.2
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.6e-12 76.3 58 67.2
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.6e-12 76.3 58 67.2
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.6e-12 76.3 58 67.2
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 7.4e-12 75.9 58 67.2
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 7.1e-07 59.3 38 73.7
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 2.7e-06 57.4 45 60.0


User provided reference genes

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