Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 0.0e+00 1140.2 586 100.0
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 2.6e-269 931.8 589 82.9
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 2.0e-213 746.1 590 69.0
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 1.4e-209 733.4 592 67.1
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 5.7e-184 648.3 594 60.4
FAN20G2359 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.7e-180 636.7 382 85.1
FAN24G1918 Fragaria x ananassa HOM05D006351 ORTHO05D007796 9.5e-179 630.9 382 84.8
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 4.0e-177 625.5 595 59.2
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 5.2e-177 625.2 606 57.4
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 2.0e-176 623.2 598 57.0
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 1.7e-175 620.2 650 55.4
FAN15G0846 Fragaria x ananassa HOM05D006351 ORTHO05D007796 2.2e-175 619.8 382 83.2
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 1.1e-174 617.5 592 57.8
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 6.6e-172 608.2 598 57.2
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 8.6e-172 607.8 591 57.4
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 1.1e-171 607.4 588 57.8
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 7.5e-168 594.7 592 54.7
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.4e-166 590.5 572 56.3
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 3.2e-166 589.3 590 55.8
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 5.4e-166 588.6 587 55.5
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 1.6e-165 587.0 573 55.3
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 6.6e-164 581.6 611 54.7
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 1.1e-163 580.9 565 55.2
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 3.6e-162 575.9 591 55.2
FAN27G0329 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.1e-161 574.3 382 78.3
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 3.4e-160 569.3 625 51.4
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 3.4e-160 569.3 589 54.8
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 4.4e-160 568.9 595 54.3
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 1.7e-159 567.0 588 54.1
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 1.1e-158 564.3 625 50.9
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 2.4e-158 563.1 625 51.0
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 2.4e-158 563.1 599 53.8
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 5.4e-158 562.0 585 54.2
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 9.2e-158 561.2 591 53.0
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 4.6e-157 558.9 587 54.2
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 1.0e-156 557.8 584 52.9
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 3.0e-156 556.2 566 54.1
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 8.6e-156 554.7 600 53.5
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 1.9e-155 553.5 594 53.2
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 5.6e-155 552.0 589 52.3
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 8.9e-153 544.7 584 52.1
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 1.5e-152 543.9 644 50.6
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 1.3e-151 540.8 607 51.7
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 1.7e-151 540.4 634 50.8
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 9.2e-150 534.6 569 51.0
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 7.8e-149 531.6 596 49.0
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 3.0e-148 529.6 565 51.5
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 1.6e-146 523.9 625 49.0
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 3.6e-146 522.7 590 50.5
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.1e-145 521.2 565 50.6
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 2.4e-145 520.0 590 50.3
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 3.4e-144 516.2 600 48.2
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 4.4e-144 515.8 589 50.6
COL.COLO4_18917 Corchorus olitorius HOM05D006351 ORTHO05D007796 1.4e-142 510.8 590 50.2
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 1.6e-141 507.3 586 50.3
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 3.5e-141 506.1 593 48.1
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 1.3e-140 504.2 592 50.5
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 3.6e-138 496.1 567 51.1
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 4.0e-137 492.7 584 50.2
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 8.4e-135 485.0 587 47.7
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 7.1e-134 481.9 596 47.0
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 9.3e-134 481.5 596 47.3
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 1.6e-133 480.7 646 43.8
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 1.3e-132 477.6 598 48.2
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 3.1e-129 466.5 572 46.0
Migut.G00796 Erythranthe guttata HOM05D006351 ORTHO05D007796 1.5e-128 464.2 602 46.5
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 2.6e-128 463.4 567 49.7
ATR0629G052 Amborella trichopoda HOM05D006351 ORTHO05D007796 1.6e-125 454.1 577 44.2
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 2.7e-125 453.4 641 43.7
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 1.0e-124 451.4 516 50.0
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 1.5e-123 447.6 473 53.3
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 1.5e-120 437.6 572 44.8
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 8.4e-119 431.8 571 44.5
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 1.1e-118 431.4 572 45.1
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 2.5e-115 420.2 536 45.5
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 2.5e-115 420.2 615 43.1
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 1.6e-114 417.5 579 43.7
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 2.2e-114 417.2 568 43.5
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 2.8e-114 416.8 577 43.5
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 8.5e-111 405.2 578 42.4
unitig_0.g2412 Utricularia gibba HOM05D006351 ORTHO05D007796 1.2e-109 401.4 563 42.3
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 6.1e-109 399.1 579 42.3
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 1.1e-107 394.8 572 40.6
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 1.9e-107 394.0 516 45.3
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 1.4e-105 387.9 571 41.5
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 5.3e-105 386.0 576 41.7
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 5.3e-105 386.0 486 48.6
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 6.9e-105 385.6 491 44.4
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 7.9e-101 372.1 591 36.7
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 1.5e-99 367.9 428 51.4
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 6.9e-97 359.0 503 42.3
Medtr1g013030 Medicago truncatula HOM05D006351 ORTHO05D007796 5.2e-92 342.8 337 55.8
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 1.7e-90 337.8 644 37.1
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 2.2e-90 337.4 383 51.7
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 2.2e-90 337.4 406 49.8
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 2.6e-88 330.5 628 37.4
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 9.1e-81 305.4 561 38.9
Ah.10g035670 Amaranthus hybridus HOM05D006351 ORTHO05D007796 1.7e-79 301.2 595 37.0
Zm00001eb028280 Zea mays HOM05D006351 ORTHO05D007796 5.2e-76 289.7 444 36.9
Cc11_g00420 Coffea canephora HOM05D006351 ORTHO05D007796 5.4e-73 279.6 269 55.8
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 5.6e-62 243.0 461 37.5
CAN.G142.3 Capsicum annuum HOM05D006351 ORTHO05D007796 2.7e-56 224.2 296 47.3
Pp3c8_15630 Physcomitrium patens HOM05D006351 ORTHO05D007796 1.2e-45 188.7 492 29.1
SEGI_10292 Sequoiadendron giganteum HOM05D006351 ORTHO05D000001 2.9e-42 177.6 291 38.8
FAN07G1533 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.6e-40 171.8 91 93.4
SMO200G0034 Selaginella moellendorffii HOM05D006351 ORTHO05D007796 1.5e-38 165.2 517 27.1
CANSAT25G0983 Cannabis sativa HOM05D006351 ORTHO05D007796 4.1e-33 147.1 154 50.0
Mapoly0027s0143 Marchantia polymorpha HOM05D006351 ORTHO05D007796 4.1e-33 147.1 548 23.4
AagrBONN_evm.TU.Sc2ySwM_368.1425 Anthoceros agrestis HOM05D006351 ORTHO05D007796 8.7e-31 139.4 633 23.5
Pp3c20_13310 Physcomitrium patens HOM05D006351 ORTHO05D007796 2.5e-30 137.9 524 26.0
MBI14_g30358_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 7.3e-22 109.8 130 50.8
CDE02G0453 Ceratophyllum demersum HOM05D006351 ORTHO05D007796 2.4e-20 104.8 251 33.5
CAN.G142.2 Capsicum annuum HOM05D006351 ORTHO05D007796 3.8e-18 97.4 103 51.5
Medtr1g012260 Medicago truncatula HOM05D006351 ORTHO05D007796 7.1e-17 93.2 101 49.5
FvH4_6g18901 Fragaria vesca HOM05D006351 ORTHO05D007796 3.0e-15 87.8 103 52.4
CAN.G142.4 Capsicum annuum HOM05D006351 ORTHO05D007796 7.4e-14 83.2 140 41.4
Medtr1g012280 Medicago truncatula HOM05D006351 ORTHO05D007796 6.9e-12 76.6 129 43.4
Gohir.A04G102300 Gossypium hirsutum HOM05D001271 ORTHO05D007796 4.5e-11 73.9 63 54.0
CBR_g18678 Chara braunii HOM05D006351 ORTHO05D007796 2.2e-10 71.6 244 27.0
Gohir.A11G232166 Gossypium hirsutum HOM05D006351 ORTHO05D007796 2.2e-10 71.6 64 50.0
Gohir.A01G131311 Gossypium hirsutum HOM05D006351 ORTHO05D007796 2.9e-10 71.2 117 37.6
Gohir.A13G118000 Gossypium hirsutum HOM05D006351 ORTHO05D007796 5.5e-09 67.0 64 48.4
Gohir.A03G098900 Gossypium hirsutum HOM05D001271 ORTHO05D007796 1.3e-07 62.4 52 55.8


User provided reference genes

Program Settings