Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.7e-77 292.0 149 100.0
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.4e-22 109.4 267 34.1
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.5e-19 100.1 251 33.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 2.5e-19 99.4 257 30.7
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.0e-17 92.0 261 29.9
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.2e-16 90.5 101 53.5
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 9.9e-16 87.4 244 31.1
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 9.9e-16 87.4 263 28.9
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.7e-15 86.7 252 30.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.9e-15 85.1 106 47.2
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 8.4e-15 84.3 260 31.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.9e-14 83.2 249 29.7
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.9e-14 83.2 253 28.5
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.4e-14 82.8 106 46.2
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 3.2e-14 82.4 261 28.0
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-13 80.1 107 43.9
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.1e-13 79.7 226 30.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.7e-13 79.3 249 28.1
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.7e-13 79.3 252 27.4
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.6e-13 78.6 260 30.4
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 6.0e-13 78.2 261 29.5
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 7.9e-13 77.8 249 27.7
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.3e-12 77.0 251 28.3
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.3e-12 76.3 260 30.8
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.3e-12 76.3 196 32.7
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.0e-12 75.9 258 29.1
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 6.7e-12 74.7 271 28.4
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-11 73.9 106 45.3
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.5e-11 73.6 249 27.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.9e-11 73.2 251 25.5
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.3e-11 72.4 263 26.6
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 4.3e-11 72.0 258 27.5
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.3e-11 72.0 273 27.1
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.3e-11 72.0 106 43.4
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.3e-11 72.0 230 27.4
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.3e-11 72.0 250 26.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 5.6e-11 71.6 251 26.7
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.3e-10 70.5 242 27.3
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.6e-10 70.1 259 27.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.8e-10 69.3 112 39.3
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 6.2e-10 68.2 244 26.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 6.2e-10 68.2 97 39.2
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 8.1e-10 67.8 106 38.7
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.1e-09 67.4 263 26.2
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-09 67.4 108 42.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-09 67.4 108 42.6
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.1e-09 67.4 249 26.5
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.4e-09 67.0 257 27.6
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.4e-09 67.0 216 26.9
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.4e-09 66.2 266 24.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.1e-09 65.9 253 26.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 3.1e-09 65.9 248 25.8
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 4.0e-09 65.5 97 38.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 4.0e-09 65.5 203 29.1
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.3e-09 65.1 105 44.8
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 9.0e-09 64.3 249 26.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.0e-09 64.3 90 42.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.2e-08 63.9 226 26.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.5e-08 63.5 249 26.1
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.5e-08 63.5 228 25.9
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 3.4e-08 62.4 224 25.9
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 3.4e-08 62.4 238 23.5
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 5.8e-08 61.6 105 43.8
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 5.8e-08 61.6 37 73.0
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 5.8e-08 61.6 250 26.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 7.6e-08 61.2 99 40.4
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 7.6e-08 61.2 141 31.9
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.3e-07 60.5 40 65.0
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.3e-07 60.5 222 27.5
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.3e-07 60.5 115 38.3
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.7e-07 60.1 224 25.0
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.7e-07 60.1 245 26.5
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.7e-07 60.1 37 67.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.2e-07 59.7 37 70.3
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.2e-07 59.7 37 70.3
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.2e-07 59.7 34 76.5
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.9e-07 59.3 257 26.5
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 3.8e-07 58.9 245 26.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.8e-07 58.9 225 24.9
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.9e-07 58.5 85 40.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 4.9e-07 58.5 238 22.7
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 4.9e-07 58.5 238 22.7
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.4e-07 58.2 37 67.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.1e-06 57.4 267 24.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-06 57.4 37 62.2
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-06 57.0 70 45.7
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.4e-06 57.0 111 36.9
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.4e-06 57.0 37 59.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.9e-06 56.6 260 25.8
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.9e-06 56.6 36 66.7
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.4e-06 56.2 75 38.7
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.4e-06 56.2 268 22.8
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.4e-06 56.2 113 35.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.4e-06 56.2 72 40.3
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.2e-06 55.8 95 35.8
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.2e-06 55.5 96 36.5
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.2e-06 55.5 37 62.2
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.2e-06 55.5 91 40.7
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 4.2e-06 55.5 37 67.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 5.5e-06 55.1 131 32.8
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.5e-06 55.1 262 25.6
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 7.1e-06 54.7 75 36.0
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 7.1e-06 54.7 75 36.0
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 9.3e-06 54.3 37 59.5
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 9.3e-06 54.3 37 59.5
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.3e-06 54.3 86 38.4


User provided reference genes

Program Settings