Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.1e-234 816.2 412 100.0
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.3e-222 776.2 412 93.7
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.7e-222 774.6 412 93.7
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.9e-222 774.2 412 93.4
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.1e-221 771.2 412 93.0
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.4e-221 770.8 412 93.0
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.8e-208 729.2 413 86.9
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 6.0e-204 714.1 411 85.2
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 5.1e-203 711.1 413 84.7
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 7.3e-202 707.2 412 82.0
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 6.8e-200 700.7 412 81.6
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.6e-199 698.7 411 82.2
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.3e-198 696.4 412 81.3
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.9e-197 692.6 412 81.8
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 5.4e-197 691.0 413 82.3
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.2e-196 689.9 410 80.7
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 2.1e-196 689.1 412 79.4
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 2.1e-196 689.1 412 81.3
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.0e-195 686.8 411 80.8
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.3e-195 685.6 413 81.1
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 8.7e-195 683.7 412 79.9
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.3e-193 679.9 414 79.2
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.6e-193 679.5 414 80.4
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.1e-193 679.1 412 80.3
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 4.8e-193 677.9 412 80.1
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 6.2e-193 677.6 409 80.4
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 6.2e-193 677.6 412 78.6
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 8.1e-193 677.2 412 79.1
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.4e-192 676.4 414 80.7
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.4e-192 676.4 412 79.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.1e-192 675.2 414 78.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 4.0e-192 674.9 413 79.4
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.2e-191 673.3 416 79.8
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.0e-191 672.5 416 79.6
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 2.6e-191 672.2 417 78.9
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 5.8e-191 671.0 416 78.4
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 7.6e-191 670.6 412 77.7
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 9.9e-191 670.2 412 77.7
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.7e-190 669.5 412 80.1
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.9e-190 667.9 412 78.9
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 6.4e-190 667.5 413 79.7
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 8.4e-190 667.2 414 79.2
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.1e-189 666.8 411 78.6
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.9e-189 666.0 412 77.7
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 4.2e-189 664.8 413 78.7
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 5.4e-189 664.5 415 79.0
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 7.1e-189 664.1 415 79.5
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.2e-188 663.3 412 78.2
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 2.1e-188 662.5 412 77.7
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.5e-188 661.8 410 77.8
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 7.8e-188 660.6 415 79.3
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 7.8e-188 660.6 412 77.7
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.7e-187 659.4 412 75.7
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.7e-187 659.4 415 79.3
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.7e-187 659.4 410 77.3
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 3.9e-187 658.3 410 77.6
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 4.3e-186 654.8 412 76.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 5.6e-186 654.4 445 74.2
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.3e-185 653.3 413 76.3
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 3.6e-185 651.7 410 76.8
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 6.2e-185 651.0 412 76.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 6.2e-185 651.0 415 77.3
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.1e-184 648.7 410 76.8
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 7.1e-181 637.5 412 75.2
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 3.5e-180 635.2 414 74.4
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 7.9e-180 634.0 411 76.4
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 7.9e-180 634.0 411 74.9
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.0e-179 633.6 411 75.9
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-179 633.3 413 74.8
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.8e-179 632.9 412 74.5
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 3.0e-179 632.1 412 74.5
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 3.9e-179 631.7 411 74.2
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 6.7e-179 630.9 410 75.1
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 6.7e-179 630.9 411 74.2
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 6.7e-179 630.9 411 74.2
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.1e-178 630.2 413 74.3
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.5e-178 629.8 414 75.4
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.3e-178 628.2 413 74.6
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.6e-178 627.9 411 75.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 9.6e-178 627.1 412 73.5
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 9.6e-178 627.1 413 74.6
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.6e-177 626.3 413 75.1
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.6e-177 626.3 413 73.8
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.1e-177 625.9 413 73.4
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.8e-177 625.5 413 74.3
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.8e-177 625.5 455 69.0
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 2.8e-177 625.5 414 72.5
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.7e-177 625.2 479 66.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 4.8e-177 624.8 412 74.0
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.8e-177 624.8 413 74.1
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 8.1e-177 624.0 413 73.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.4e-176 623.2 411 73.2
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.4e-176 622.5 417 72.4
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 4.0e-176 621.7 411 73.0
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 4.0e-176 621.7 414 72.5
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 5.3e-176 621.3 411 74.5
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 9.0e-176 620.5 417 71.9
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.2e-175 620.2 413 72.4
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.0e-175 619.4 413 72.4
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 72.2
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.7e-174 616.3 411 71.5
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 2.2e-174 615.9 410 71.7
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.9e-174 615.5 411 73.7
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.4e-173 613.2 417 71.2
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.9e-173 612.8 403 76.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 4.2e-173 611.7 375 78.4
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.0e-171 605.5 410 71.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 6.7e-171 604.4 413 70.2
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.1e-169 599.4 508 61.0
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.3e-168 594.7 412 69.2
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 1.7e-166 589.7 466 63.3
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.4e-165 586.6 420 70.2
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.5e-165 584.7 412 68.0
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 9.0e-160 567.4 418 68.4
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 2.1e-156 556.2 410 65.9
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 7.9e-156 554.3 429 64.6
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.9e-155 552.0 350 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 4.8e-145 518.5 410 61.5
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 9.1e-144 514.2 306 80.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 3.8e-142 508.8 410 60.0
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 5.0e-142 508.4 329 74.8
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.5e-141 506.1 341 74.2
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.0e-134 484.2 348 69.0
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.9e-133 479.9 419 59.4
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.5e-133 479.6 334 70.7
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 3.4e-130 469.2 410 56.1
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 1.8e-128 463.4 421 57.5
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.9e-125 453.4 421 56.1
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.0e-110 404.4 234 82.9
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 5.8e-106 388.7 243 76.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 3.2e-88 329.7 434 44.5
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.0e-78 298.1 181 79.0
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 4.0e-75 286.2 237 62.4
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 3.4e-74 283.1 391 42.2
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 9.9e-66 255.0 329 44.1
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 8.4e-57 225.3 188 64.4
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 7.2e-48 195.7 113 81.4
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.6e-47 194.5 256 47.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.7e-39 167.2 144 57.6
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.4e-38 164.9 219 43.8
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 4.7e-31 139.8 79 82.3
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.8e-30 137.9 86 70.9
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.1e-27 128.6 84 67.9
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 6.5e-25 119.4 183 44.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.6e-23 113.6 90 61.1
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 5.2e-22 109.8 88 62.5
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 5.2e-22 109.8 88 62.5
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 2.0e-21 107.8 74 66.2
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 2.0e-21 107.8 74 66.2
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.3e-21 107.1 84 60.7
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 5.7e-21 106.3 74 66.2
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 2.2e-20 104.4 88 61.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 5.3e-19 99.8 81 61.7
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.7e-17 94.7 73 57.5
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.5e-16 90.9 66 62.1
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 8.8e-14 82.4 65 56.9
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 9.8e-13 79.0 113 43.4
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 1.3e-12 78.6 113 42.5
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.3e-12 78.6 59 61.0
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 2.8e-12 77.4 86 51.2
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 1.6e-07 61.6 125 36.0


User provided reference genes

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