Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 0.0e+00 1130.9 609 100.0
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-288 996.1 602 89.4
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 2.6e-288 995.0 609 88.8
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-284 982.6 614 86.6
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.8e-282 974.9 628 85.8
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.3e-278 959.9 597 86.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-273 946.4 632 81.5
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 3.5e-224 781.9 612 73.2
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.8e-209 733.0 618 67.8
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.0e-208 729.6 614 65.6
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 8.0e-205 717.6 613 67.4
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 4.4e-203 711.8 609 67.3
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.7e-202 709.9 618 65.7
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.8e-201 706.4 615 64.4
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 6.1e-197 691.4 618 63.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.8e-196 689.9 613 62.3
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.2e-196 688.3 613 62.2
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 8.9e-196 687.6 613 61.0
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 9.8e-195 684.1 623 61.0
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.8e-195 684.1 607 60.6
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 3.7e-194 682.2 620 63.5
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 6.4e-194 681.4 587 65.8
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.4e-194 681.4 610 61.3
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 6.4e-194 681.4 606 63.7
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.0e-192 676.4 605 63.8
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.5e-192 675.6 602 61.8
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.3e-191 673.7 602 61.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.3e-191 673.7 602 61.5
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 8.6e-191 671.0 578 64.2
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.9e-190 669.8 545 69.9
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 5.6e-190 668.3 609 60.8
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 6.2e-189 664.8 615 62.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 8.0e-189 664.5 608 59.4
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.8e-188 663.3 582 62.9
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.8e-188 663.3 611 63.2
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 2.3e-188 662.9 606 60.4
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.2e-187 660.6 611 59.6
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.5e-187 660.2 615 62.9
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 3.4e-187 659.1 612 62.1
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 5.8e-187 658.3 611 62.5
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.3e-186 657.1 522 68.0
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 5.4e-185 651.7 673 58.7
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.2e-184 650.6 620 62.1
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 2.0e-184 649.8 607 61.3
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.7e-184 649.4 581 62.5
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.7e-184 649.4 597 60.0
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.6e-184 648.7 620 60.8
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 6.0e-184 648.3 620 61.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.5e-182 643.7 609 61.2
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.5e-182 643.7 579 62.0
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.9e-182 643.3 584 59.8
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 4.3e-182 642.1 604 61.6
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 7.3e-182 641.3 591 58.9
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.5e-182 641.0 608 59.5
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 9.5e-182 641.0 605 59.8
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 2.1e-181 639.8 612 59.5
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.8e-181 639.4 611 60.4
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.8e-181 639.4 611 62.0
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 8.1e-181 637.9 594 62.0
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.3e-180 636.3 585 59.8
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.8e-180 634.8 635 57.8
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-179 634.0 609 57.1
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 2.6e-179 632.9 588 59.5
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 5.8e-179 631.7 637 59.0
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 9.8e-179 630.9 541 66.5
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.7e-178 630.2 605 62.5
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.7e-178 629.0 605 57.2
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.9e-177 626.7 587 59.3
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.4e-177 626.3 587 60.3
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 4.1e-177 625.5 620 56.9
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 4.1e-177 625.5 618 61.7
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 2.1e-176 623.2 615 61.5
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.1e-176 623.2 593 58.5
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 2.7e-176 622.9 622 60.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 4.6e-176 622.1 481 67.8
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.0e-176 621.7 615 57.6
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.3e-175 619.8 628 55.9
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 2.3e-175 619.8 579 59.6
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 3.0e-175 619.4 655 57.3
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 3.0e-175 619.4 593 58.2
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 3.9e-175 619.0 606 61.1
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 6.6e-175 618.2 554 64.1
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.1e-174 617.5 593 60.5
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 3.3e-174 615.9 609 57.5
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 2.1e-173 613.2 579 60.1
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 2.1e-173 613.2 591 56.9
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.8e-173 612.8 627 56.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.8e-173 612.8 572 57.7
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.8e-173 612.8 628 57.5
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.6e-173 612.5 613 56.8
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.2e-171 607.4 607 58.2
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 3.4e-171 605.9 583 58.3
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 4.4e-171 605.5 623 57.1
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.3e-170 604.0 630 56.2
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.1e-169 600.9 649 54.4
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.1e-168 596.7 576 57.3
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 3.5e-168 595.9 553 59.5
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.3e-167 594.0 578 57.6
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 3.0e-167 592.8 614 54.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 8.6e-167 591.3 570 57.5
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 8.1e-165 584.7 621 55.4
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.1e-164 584.3 613 54.3
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.8e-164 583.6 609 54.2
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.0e-163 580.1 593 56.5
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 4.4e-163 578.9 658 50.8
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 4.4e-163 578.9 604 56.1
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.2e-162 576.6 671 50.1
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.9e-162 576.2 616 54.4
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 2.9e-162 576.2 616 54.2
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.8e-162 575.9 615 54.6
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.9e-161 573.5 607 53.7
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-161 573.5 610 54.1
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 3.2e-161 572.8 607 53.7
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.2e-161 572.8 610 54.3
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.4e-161 572.0 495 64.0
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.6e-160 570.5 609 52.9
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.1e-160 570.1 617 54.1
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.7e-159 567.0 607 53.4
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 2.3e-159 566.6 605 55.5
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.1e-158 564.3 602 53.5
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 4.3e-158 562.4 602 56.5
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 4.0e-156 555.8 587 56.7
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.0e-155 553.5 589 55.7
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 6.4e-154 548.5 570 55.4
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 8.4e-154 548.1 571 55.5
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.2e-153 545.8 557 56.6
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 5.4e-153 545.4 596 53.5
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.7e-152 543.1 603 52.4
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 6.0e-152 542.0 555 58.2
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.3e-150 536.2 469 63.5
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.3e-141 507.7 519 57.6
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 8.1e-141 505.0 611 48.8
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 3.9e-135 486.1 600 49.3
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.3e-133 481.1 571 49.6
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 3.1e-132 476.5 461 60.7
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.3e-130 471.1 592 50.3
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.0e-127 461.5 575 49.4
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.0e-127 461.5 565 50.1
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.5e-123 447.6 387 66.1
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 2.9e-122 443.4 572 47.4
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.0e-119 434.9 601 45.3
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.0e-111 408.3 343 63.8
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.3e-109 399.1 442 51.1
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 9.4e-105 385.2 394 56.3
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.0e-95 353.2 643 35.9
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 9.1e-92 342.0 317 60.9
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.6e-88 331.3 337 56.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.6e-83 314.7 373 50.1
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 6.6e-66 256.1 164 80.5
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.7e-58 231.5 260 55.0
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.5e-49 201.1 227 54.6
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 4.9e-45 186.8 138 71.0
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.3e-42 178.7 258 45.7
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 4.8e-40 170.2 293 36.9
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 4.0e-31 140.6 167 52.7
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 5.3e-31 140.2 453 25.4
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 1.1e-25 122.5 525 24.2
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 6.0e-19 100.1 116 45.7
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.3e-18 98.2 72 66.7
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 3.0e-18 97.8 83 53.0
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.6e-16 92.0 62 72.6
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 2.8e-16 91.3 66 75.8
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 6.3e-16 90.1 85 51.8
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.9e-13 81.3 197 33.5
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 2.5e-12 78.2 100 48.0
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 4.2e-12 77.4 66 59.1
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 2.1e-11 75.1 104 43.3
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 8.8e-10 69.7 101 42.6


User provided reference genes

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