Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0286361 Rosa chinensis HOM05D002578 ORTHO05D002698 6.6e-57 223.8 111 100.0
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 4.0e-22 108.2 64 84.4
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 5.3e-22 107.8 64 84.4
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 8.4e-20 100.5 64 78.1
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.5e-19 99.0 64 76.6
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 9.3e-19 97.1 90 60.0
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 9.3e-19 97.1 64 75.0
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 9.3e-19 97.1 64 75.0
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.1e-18 95.9 64 75.0
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 4.6e-18 94.7 81 60.5
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 7.9e-18 94.0 64 71.9
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 1.3e-17 93.2 59 79.7
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 1.3e-17 93.2 64 73.4
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 8.7e-17 90.5 81 58.0
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 8.7e-17 90.5 81 58.0
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 8.7e-17 90.5 81 58.0
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 8.7e-17 90.5 81 58.0
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 1.9e-16 89.4 80 61.2
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 4.3e-16 88.2 81 56.8
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 4.3e-16 88.2 81 56.8
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.3e-16 88.2 80 60.0
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.3e-16 88.2 80 60.0
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.3e-16 88.2 80 60.0
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.3e-16 88.2 80 60.0
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 4.3e-16 88.2 64 62.5
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 4.3e-16 88.2 64 70.3
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 5.7e-16 87.8 64 68.8
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 5.7e-16 87.8 64 70.3
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 9.7e-16 87.0 62 69.4
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 9.7e-16 87.0 64 70.3
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 9.7e-16 87.0 80 60.0
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 1.3e-15 86.7 84 54.8
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 1.3e-15 86.7 62 72.6
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-15 86.7 79 58.2
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.3e-15 86.7 84 56.0
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 1.6e-15 86.3 64 68.8
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 2.2e-15 85.9 64 68.8
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 2.2e-15 85.9 64 68.8
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 2.2e-15 85.9 64 68.8
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 2.2e-15 85.9 64 68.8
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 2.2e-15 85.9 64 68.8
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 2.2e-15 85.9 64 68.8
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 2.2e-15 85.9 64 68.8
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 2.2e-15 85.9 64 68.8
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 2.2e-15 85.9 64 68.8
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-15 85.9 64 68.8
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.8e-15 85.5 80 58.8
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 3.7e-15 85.1 59 71.2
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 4.8e-15 84.7 62 71.0
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-15 84.3 62 69.4
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 8.2e-15 84.0 80 58.8
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 8.2e-15 84.0 64 68.8
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.1e-14 83.6 65 64.6
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 2.4e-14 82.4 81 54.3
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 3.1e-14 82.0 62 69.4
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 3.1e-14 82.0 62 69.4
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 4.1e-14 81.6 85 55.3
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 4.1e-14 81.6 80 57.5
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 5.3e-14 81.3 65 63.1
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 9.0e-14 80.5 63 65.1
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 9.0e-14 80.5 64 67.2
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 9.0e-14 80.5 62 67.7
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 2.0e-13 79.3 81 55.6
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 2.0e-13 79.3 81 55.6
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 3.4e-13 78.6 80 55.0
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 4.5e-13 78.2 81 54.3
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 5.9e-13 77.8 56 69.6
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 7.6e-13 77.4 64 62.5
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 7.6e-13 77.4 64 62.5
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 1.0e-12 77.0 61 65.6
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 1.0e-12 77.0 80 53.8
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 1.3e-12 76.6 56 73.2
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 1.7e-12 76.3 64 65.6
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 2.2e-12 75.9 58 65.5
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 2.2e-12 75.9 81 53.1
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 2.2e-12 75.9 62 61.3
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 2.2e-12 75.9 64 62.5
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 2.9e-12 75.5 64 62.5
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 2.9e-12 75.5 64 62.5
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 6.5e-12 74.3 64 60.9
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 6.5e-12 74.3 61 62.3
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 8.5e-12 73.9 64 57.8
Gohir.A04G116550 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.3e-09 65.9 52 61.5
RcHm_v2.0_Chr5g0025841 Rosa chinensis HOM05D002578 ORTHO05D002698 2.3e-09 65.9 44 77.3
Lsat_1_v5_gn_5_168080 Lactuca sativa HOM05D002578 ORTHO05D002698 1.1e-08 63.5 64 54.7
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.5e-08 63.2 56 60.7
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 1.9e-08 62.8 64 51.6
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 3.3e-08 62.0 60 51.7
Zm00001eb442200 Zea mays HOM05D002578 ORTHO05D002698 3.3e-08 62.0 62 51.6
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 2.2e-07 59.3 61 45.9
Nn4g25227 Nelumbo nucifera HOM05D002578 ORTHO05D002698 2.2e-07 59.3 64 54.7
Os12g0488300 Oryza sativa ssp. japonica HOM05D002578 ORTHO05D002698 6.3e-07 57.8 77 45.5
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 8.2e-07 57.4 101 38.6
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 8.2e-07 57.4 101 38.6
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 8.2e-07 57.4 101 38.6
Zm00001eb435110 Zea mays HOM05D002578 ORTHO05D002698 1.8e-06 56.2 51 58.8
BraSC143t45639Z Brassica rapa HOM05D002578 ORTHO05D002698 3.1e-06 55.5 64 50.0


User provided reference genes

Program Settings