Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 8.9e-301 1036.2 531 100.0
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 1.8e-237 825.9 494 86.4
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 1.9e-234 815.8 494 85.4
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 3.4e-228 795.0 528 80.1
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 5.0e-219 764.6 495 80.0
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 5.1e-216 754.6 497 78.3
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 3.7e-198 695.3 434 80.9
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 4.0e-176 622.1 492 66.7
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 3.2e-173 612.5 492 66.1
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 7.0e-173 611.3 496 65.3
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 1.2e-172 610.5 491 64.4
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 1.5e-170 603.6 456 66.0
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 6.2e-169 598.2 478 64.6
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 7.5e-167 591.3 495 64.0
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 9.8e-167 590.9 500 63.0
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 3.7e-166 589.0 500 62.8
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 4.9e-166 588.6 493 62.1
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 4.6e-164 582.0 493 63.5
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 6.0e-164 581.6 496 61.7
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 1.3e-163 580.5 486 62.8
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 1.9e-162 576.6 491 62.1
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 3.3e-162 575.9 491 61.5
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 7.3e-162 574.7 500 62.0
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 9.5e-162 574.3 500 61.0
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 2.8e-161 572.8 492 61.6
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 6.2e-161 571.6 496 60.9
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 8.1e-161 571.2 562 56.6
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 4.4e-159 565.5 464 62.3
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 7.6e-159 564.7 496 59.9
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 9.9e-159 564.3 444 63.3
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 3.7e-158 562.4 436 63.5
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 8.4e-158 561.2 461 61.2
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 2.4e-157 559.7 458 61.1
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 2.4e-157 559.7 507 58.4
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 1.2e-156 557.4 494 58.1
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 1.6e-156 557.0 465 60.4
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 3.5e-156 555.8 475 61.5
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 1.0e-155 554.3 426 64.3
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 1.0e-155 554.3 459 62.1
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 1.3e-155 553.9 446 62.1
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 1.7e-155 553.5 491 59.9
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 6.6e-155 551.6 475 59.4
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 6.6e-155 551.6 503 58.1
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 6.6e-155 551.6 429 62.2
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 9.6e-154 547.7 474 60.1
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 1.2e-153 547.4 504 57.1
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 1.2e-153 547.4 460 59.8
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 1.6e-153 547.0 487 57.5
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 2.1e-153 546.6 471 59.9
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 2.1e-153 546.6 461 60.1
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 2.8e-153 546.2 466 59.2
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 3.6e-153 545.8 437 62.2
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 8.1e-153 544.7 445 60.9
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 8.1e-153 544.7 493 56.8
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 1.8e-152 543.5 461 59.7
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 3.1e-152 542.7 498 56.8
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 1.5e-151 540.4 439 61.0
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 5.8e-151 538.5 424 62.3
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 2.2e-150 536.6 500 56.8
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 2.9e-150 536.2 479 57.4
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 2.9e-150 536.2 417 61.9
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 6.4e-150 535.0 498 56.4
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 8.4e-150 534.6 458 59.2
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.6e-148 530.4 417 59.7
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 1.6e-148 530.4 478 56.3
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.6e-148 530.4 446 57.6
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 2.1e-148 530.0 413 61.7
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 2.3e-147 526.6 484 58.7
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 2.3e-147 526.6 442 59.3
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 8.7e-147 524.6 456 58.3
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 1.1e-146 524.2 490 53.7
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 2.5e-146 523.1 485 54.2
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 3.3e-146 522.7 464 60.8
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 7.3e-146 521.5 486 56.4
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 1.1e-144 517.7 427 61.6
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 1.8e-144 516.9 406 61.6
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 2.4e-144 516.5 457 57.5
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 2.2e-142 510.0 376 63.6
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 3.8e-142 509.2 389 63.5
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 4.2e-141 505.8 488 56.1
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 5.4e-141 505.4 370 65.9
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 1.2e-140 504.2 504 51.8
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 5.1e-139 498.8 422 58.3
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 2.5e-138 496.5 460 56.7
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 1.1e-136 491.1 391 61.1
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 5.3e-136 488.8 525 51.6
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 2.1e-132 476.9 417 56.8
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 4.6e-132 475.7 501 53.5
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 6.0e-132 475.3 418 56.9
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 9.6e-130 468.0 368 60.1
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 5.5e-125 452.2 430 55.1
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 9.3e-125 451.4 470 50.4
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 2.7e-124 449.9 363 58.7
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 1.2e-119 434.5 384 61.5
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.9e-117 427.2 417 52.0
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 8.8e-107 391.7 426 48.1
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 7.7e-103 378.6 428 46.5
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 7.7e-103 378.6 478 44.1
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 1.2e-100 371.3 283 65.0
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 2.6e-98 363.6 426 43.2
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 7.7e-87 325.5 300 52.0
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 5.5e-85 319.3 415 40.2
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 7.2e-85 318.9 410 42.2
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 3.4e-82 310.1 222 65.3
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 9.1e-80 302.0 434 41.7
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 1.9e-77 294.3 271 58.7
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 3.1e-72 276.9 311 52.4
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 8.6e-70 268.9 259 57.5
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 2.8e-52 210.7 221 49.8
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 4.0e-51 206.8 453 31.6
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 1.3e-49 201.8 456 34.0
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 1.7e-38 164.9 174 53.4
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 9.9e-34 149.1 105 66.7
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 9.3e-32 142.5 103 64.1
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 2.1e-31 141.4 198 46.5
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.0e-30 139.0 115 59.1
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 3.3e-29 134.0 112 56.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.1e-28 129.4 418 28.5
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 7.6e-26 122.9 135 57.8
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.2e-23 115.5 88 62.5
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 2.6e-18 97.8 88 52.3
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 6.7e-14 83.2 69 60.9
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 1.9e-13 81.6 58 72.4
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 4.0e-11 73.9 69 50.7
HPP92_002705 Vanilla planifolia HOM05D006204 ORTHO05D007851 2.0e-10 71.6 51 60.8
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 2.5e-08 64.7 117 43.6


User provided reference genes

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