Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 7.4e-178 627.1 317 100.0
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.4e-168 596.3 317 94.6
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 3.4e-167 591.7 317 93.7
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 4.7e-164 581.3 317 92.7
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 5.7e-146 521.2 314 85.7
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 2.5e-141 505.8 316 83.9
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 1.7e-134 483.0 308 79.2
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 3.3e-133 478.8 308 79.2
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 5.2e-131 471.5 309 77.3
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 1.2e-130 470.3 308 77.6
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 2.6e-130 469.2 308 77.6
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 5.7e-130 468.0 310 78.1
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 3.2e-128 462.2 311 77.8
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 9.2e-128 460.7 309 77.3
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 2.0e-127 459.5 305 79.3
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 4.6e-127 458.4 315 75.2
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 3.9e-126 455.3 310 77.1
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 8.6e-126 454.1 307 75.6
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 3.3e-125 452.2 310 74.8
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 4.3e-125 451.8 261 86.6
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 5.6e-125 451.4 311 74.9
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 1.6e-124 449.9 315 75.6
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 2.8e-124 449.1 269 84.0
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 3.6e-124 448.7 316 75.6
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 4.7e-124 448.4 284 81.3
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.8e-123 446.4 310 76.8
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 3.1e-123 445.7 313 73.5
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 6.8e-123 444.5 268 83.2
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 2.6e-122 442.6 285 79.6
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 7.5e-122 441.0 259 85.7
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.7e-121 439.9 307 73.6
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 1.7e-121 439.9 311 75.9
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 8.3e-121 437.6 316 73.7
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 8.3e-121 437.6 316 73.4
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 2.4e-120 436.0 312 74.4
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 3.2e-120 435.6 314 73.6
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 7.0e-120 434.5 310 72.6
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 2.0e-119 433.0 308 73.7
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 2.7e-119 432.6 264 81.1
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 2.7e-119 432.6 306 74.2
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 2.7e-119 432.6 304 75.0
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 3.5e-119 432.2 267 83.1
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 6.0e-119 431.4 310 72.6
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 6.0e-119 431.4 294 75.9
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 1.7e-118 429.9 310 72.6
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 3.0e-118 429.1 300 75.0
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 6.6e-118 427.9 267 80.9
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 8.6e-118 427.6 266 82.7
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 1.5e-117 426.8 309 72.5
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 1.6e-116 423.3 312 72.1
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 3.6e-116 422.2 267 79.0
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 3.6e-116 422.2 287 76.0
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 1.1e-115 420.6 312 70.5
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 1.4e-115 420.2 285 75.8
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 1.2e-114 417.2 265 80.4
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 1.5e-114 416.8 256 81.6
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 2.0e-114 416.4 265 80.0
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 2.6e-114 416.0 242 84.7
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 4.4e-114 415.2 314 71.7
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 7.5e-114 414.5 262 79.0
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 9.8e-114 414.1 241 86.3
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 2.2e-113 412.9 317 70.7
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 4.9e-113 411.8 262 79.8
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 6.4e-113 411.4 291 73.2
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.9e-112 409.8 299 70.9
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 3.2e-112 409.1 309 68.6
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 1.2e-111 407.1 246 82.5
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 1.2e-111 407.1 242 84.7
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 5.1e-110 401.7 261 78.5
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 2.5e-109 399.4 309 67.6
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 5.6e-109 398.3 294 70.1
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 5.6e-109 398.3 291 73.2
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 1.2e-108 397.1 322 69.9
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 1.6e-108 396.7 309 68.9
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 3.6e-108 395.6 312 67.9
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 3.6e-108 395.6 312 67.9
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 4.0e-107 392.1 241 81.3
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 5.2e-107 391.7 234 83.8
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 5.2e-107 391.7 309 66.7
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 1.5e-106 390.2 312 67.0
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 2.0e-106 389.8 310 67.7
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.6e-106 389.4 303 68.6
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 2.6e-106 389.4 288 69.4
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 2.6e-106 389.4 312 66.3
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 2.6e-106 389.4 305 68.2
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 3.4e-106 389.0 310 65.8
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.3e-105 387.1 305 67.2
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.3e-105 387.1 305 67.2
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 6.4e-105 384.8 306 68.0
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 1.1e-104 384.0 306 68.0
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 7.1e-104 381.3 219 88.6
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 4.0e-99 365.5 216 84.3
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 2.9e-97 359.4 266 72.6
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 2.9e-97 359.4 267 66.3
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 3.8e-97 359.0 312 63.8
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 1.1e-96 357.5 338 60.1
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 1.2e-95 354.0 241 72.6
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.6e-95 353.6 255 74.5
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 4.6e-95 352.1 262 74.0
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 6.0e-95 351.7 255 73.7
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 3.9e-94 349.0 243 74.5
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 1.8e-91 340.1 223 78.9
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 3.1e-91 339.3 241 74.3
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 2.2e-89 333.2 253 66.0
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.1e-83 314.3 252 63.5
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 2.4e-83 313.2 312 58.3
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 5.8e-82 308.5 220 74.1
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 2.2e-81 306.6 243 63.8
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 5.5e-80 302.0 197 80.7
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 1.3e-73 280.8 195 75.9
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 1.3e-70 270.8 243 59.7
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 2.6e-66 256.5 247 58.7
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 5.5e-56 222.2 298 44.6
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 9.4e-56 221.5 130 86.2
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 2.0e-45 187.2 116 76.7
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 6.1e-39 165.6 116 68.1
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 1.0e-38 164.9 112 73.2
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 3.7e-36 156.4 95 75.8
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 9.1e-35 151.8 89 83.1
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 8.0e-31 138.7 86 79.1
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 2.7e-26 123.6 90 68.9
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 3.7e-12 76.6 64 67.2
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 3.2e-11 73.6 46 78.3
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 3.2e-11 73.6 44 77.3
RcHm_v2.0_Chr6g0265711 Rosa chinensis HOM05D006330 ORTHO05D348319 8.9e-06 55.5 34 85.3


User provided reference genes

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