Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1864.7 947 100.0
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1726.1 945 92.6
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1723.4 945 92.5
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1721.1 941 92.5
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1707.2 946 91.8
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1480.7 940 79.6
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1472.6 939 79.3
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1306.2 955 69.9
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1302.3 955 69.7
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1302.0 958 68.9
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1295.8 959 69.0
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1291.9 948 68.9
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1291.2 950 69.6
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1288.1 951 68.1
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1282.3 944 68.1
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1281.9 941 69.2
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1281.2 950 67.2
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1279.6 950 67.1
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1269.2 953 66.8
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1266.5 937 68.0
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1262.7 955 67.2
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1261.9 938 67.2
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1261.9 953 67.9
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1261.1 937 68.4
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1259.2 932 69.5
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1258.4 1005 67.4
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1258.0 958 67.3
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1253.8 932 67.0
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1248.8 951 65.9
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1236.5 943 65.1
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1226.1 936 66.5
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1224.5 966 64.2
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1223.0 944 67.9
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1215.7 951 64.7
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1214.9 951 65.6
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1212.6 956 65.0
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1210.3 942 64.3
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1206.0 947 65.9
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1196.0 943 64.2
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1195.3 946 63.3
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1191.8 997 62.7
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1187.9 942 63.9
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1180.6 936 67.4
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1180.2 915 64.4
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1179.9 943 62.7
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1179.5 942 63.3
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1178.7 938 63.4
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1178.3 953 62.5
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1176.0 938 63.4
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1176.0 938 63.4
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1176.0 910 64.6
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1170.6 945 62.9
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1170.2 942 63.5
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1168.7 937 61.9
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1165.6 854 69.8
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1162.5 937 62.5
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1160.2 939 64.2
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1155.6 938 62.6
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1155.2 936 62.7
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1154.4 948 62.7
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1150.2 936 62.4
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1149.8 937 62.6
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1149.8 957 62.0
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1142.1 956 61.5
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1139.8 953 60.3
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1139.0 946 60.7
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1137.5 947 61.7
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1137.1 944 61.1
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1131.7 935 62.0
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1120.5 945 59.9
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1115.5 937 60.5
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 0.0e+00 1103.6 947 58.8
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 0.0e+00 1102.8 941 61.2
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 0.0e+00 1091.6 940 59.3
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 0.0e+00 1089.3 832 66.1
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1085.5 940 58.8
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 0.0e+00 1075.5 906 60.9
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 4.1e-309 1064.7 949 58.0
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.3e-307 1058.9 942 57.9
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.5e-306 1056.2 771 68.1
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 5.6e-306 1054.3 945 58.3
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 1.1e-304 1050.0 808 66.1
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.5e-303 1046.2 951 58.1
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.4e-301 1039.6 951 57.9
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.9e-293 1012.7 939 57.4
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 1.0e-278 963.8 934 53.1
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 3.5e-276 955.3 816 59.2
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.2e-268 930.2 737 65.4
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 5.3e-264 914.8 689 66.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.3e-262 910.2 835 58.9
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 2.2e-238 829.7 947 47.2
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 6.6e-222 775.0 954 44.5
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 8.0e-212 741.5 661 58.2
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 4.9e-201 705.7 486 71.0
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 9.2e-200 701.4 975 42.9
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 1.1e-192 677.9 941 40.8
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.7e-182 644.0 899 40.4
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 6.5e-161 572.4 421 65.8
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 3.7e-148 530.0 469 62.0
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 2.4e-147 527.3 872 35.4
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 1.5e-146 524.6 452 63.5
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 5.0e-145 519.6 744 41.7
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.4e-144 518.1 411 64.5
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 1.0e-134 485.3 936 31.9
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 6.7e-134 482.6 934 33.8
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.0e-133 481.1 420 60.5
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.1e-103 379.8 199 91.0
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.1e-102 377.5 435 50.8
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.2e-94 350.1 262 66.8
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.0e-73 282.7 350 52.9
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 2.5e-72 278.1 344 52.3
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.0e-57 229.6 461 36.9
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.8e-57 228.8 344 45.1
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 1.8e-46 192.2 117 87.2
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 2.2e-44 185.3 134 76.1
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.1e-41 174.1 142 62.0
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.4e-38 165.2 297 42.1
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 6.9e-38 163.7 124 71.8
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-26 125.9 244 36.9
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.3e-25 122.1 113 62.8
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.3e-25 122.1 142 49.3
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-24 119.0 68 86.8
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 2.6e-24 118.6 73 80.8
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 5.7e-24 117.5 130 53.1
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 5.7e-24 117.5 113 61.1
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 9.7e-24 116.7 73 79.5
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.8e-17 95.9 149 38.9
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.0e-17 94.7 59 89.8
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 2.2e-15 89.0 46 91.3
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.8e-15 88.6 82 61.0
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 6.3e-15 87.4 55 78.2
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.1e-14 85.1 55 76.4
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.0e-13 82.4 61 63.9
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.5e-13 81.6 61 67.2
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.9e-12 78.6 61 62.3
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.9e-12 78.6 38 97.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.1e-11 76.6 90 47.8
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.2e-11 74.7 61 62.3
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.2e-11 73.9 239 28.5
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 2.3e-09 68.9 60 53.3
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.5e-08 66.2 173 29.5
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 1.7e-07 62.8 38 76.3
ATR0580G291 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.1e-06 60.1 70 45.7


User provided reference genes

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