Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281341 Rosa chinensis HOM05D000806 ORTHO05D002320 6.7e-37 156.8 75 100.0
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 1.3e-32 142.5 75 89.3
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 1.3e-32 142.5 75 89.3
Eucgr.E02609 Eucalyptus grandis HOM05D000806 ORTHO05D002320 2.3e-29 131.7 72 84.7
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 8.8e-29 129.8 72 83.3
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.1e-28 129.4 73 80.8
Gohir.A07G167012 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.1e-28 129.4 73 80.8
Cpa.g.sc0.171 Carica papaya HOM05D000806 ORTHO05D002320 1.5e-28 129.0 73 82.2
AUR62032522 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.0e-28 128.6 73 82.2
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 2.0e-28 128.6 73 82.2
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 5.7e-28 127.1 73 80.8
Gorai.004G276900 Gossypium raimondii HOM05D000806 ORTHO05D002320 9.7e-28 126.3 73 79.5
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 9.7e-28 126.3 72 81.9
Lalb_Chr23g0274531 Lupinus albus HOM05D000806 ORTHO05D002320 1.7e-27 125.6 73 82.2
Lsat_1_v5_gn_8_144641 Lactuca sativa HOM05D000806 ORTHO05D002320 4.8e-27 124.0 75 78.7
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 8.2e-27 123.2 75 78.7
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 8.2e-27 123.2 75 78.7
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 8.2e-27 123.2 75 78.7
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 8.2e-27 123.2 75 78.7
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 8.2e-27 123.2 75 78.7
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 8.2e-27 123.2 75 78.7
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 8.2e-27 123.2 75 78.7
CAN.G1012.2 Capsicum annuum HOM05D000806 ORTHO05D002320 1.1e-26 122.9 73 80.8
CAN.G1897.7 Capsicum annuum HOM05D000806 ORTHO05D002320 1.1e-26 122.9 73 80.8
CAN.G3.25 Capsicum annuum HOM05D000806 ORTHO05D002320 1.1e-26 122.9 73 80.8
CAN.G653.1 Capsicum annuum HOM05D000806 ORTHO05D002320 1.1e-26 122.9 73 80.8
CAN.G793.44 Capsicum annuum HOM05D000806 ORTHO05D002320 1.1e-26 122.9 73 80.8
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 1.4e-26 122.5 73 78.1
arahy.Tifrunner.gnm1.ann1.15M9SP Arachis hypogaea HOM05D000806 ORTHO05D002320 2.4e-26 121.7 71 80.3
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 7.0e-26 120.2 73 75.3
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 7.0e-26 120.2 73 75.3
Cpa.g.sc120.42 Carica papaya HOM05D000806 ORTHO05D002320 9.1e-26 119.8 73 76.7
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.2e-25 119.4 73 78.1
Gohir.D04G104048 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.0e-25 118.6 73 75.3
MELO3C028654.2 Cucumis melo HOM05D000806 ORTHO05D002320 2.6e-25 118.2 73 78.1
MELO3C001225.2 Cucumis melo HOM05D000806 ORTHO05D002320 3.5e-25 117.9 73 78.1
MELO3C027978.2 Cucumis melo HOM05D000806 ORTHO05D002320 3.5e-25 117.9 73 78.1
Nitab4.5_0009663g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002320 5.9e-25 117.1 73 76.7
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 1.3e-24 115.9 68 77.9
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.3e-24 115.9 62 83.9
Nitab4.5_0000138g0260 Nicotiana tabacum HOM05D000806 ORTHO05D002320 1.3e-24 115.9 73 75.3
C02p43520 Brassica napus HOM05D000806 ORTHO05D002320 8.5e-24 113.2 73 74.0
C09p29580 Brassica napus HOM05D000806 ORTHO05D002320 8.5e-24 113.2 73 74.0
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 8.5e-24 113.2 73 74.0
BolSC35t60644H Brassica oleracea HOM05D000806 ORTHO05D002320 8.5e-24 113.2 73 74.0
BolSC35t60752H Brassica oleracea HOM05D000806 ORTHO05D002320 8.5e-24 113.2 73 74.0
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 8.5e-24 113.2 73 74.0
BraSC59t46593Z Brassica rapa HOM05D000806 ORTHO05D002320 8.5e-24 113.2 73 74.0
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 3.2e-23 111.3 75 73.3
Nn1g00306 Nelumbo nucifera HOM05D000806 ORTHO05D002320 4.2e-23 110.9 73 68.5
SGA_v2.0_scaffold255G45490 Striga asiatica HOM05D000806 ORTHO05D002320 7.2e-23 110.2 72 73.6
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 9.4e-23 109.8 72 75.0
BcaC04g21638 Brassica carinata HOM05D000806 ORTHO05D002320 1.2e-22 109.4 73 72.6
Lsat_1_v5_gn_7_98301 Lactuca sativa HOM05D000806 ORTHO05D002320 1.2e-22 109.4 75 72.0
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 2.7e-22 108.2 75 72.0
Prupe.7G029700 Prunus persica HOM05D000806 ORTHO05D002320 2.7e-22 108.2 57 87.7
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 4.7e-22 107.5 72 72.2
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.1e-22 107.1 60 81.7
GSVIVG01010035001 Vitis vinifera HOM05D003557 ORTHO05D001267 6.1e-22 107.1 68 69.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.3e-21 105.1 59 81.4
Cc00_g01670 Coffea canephora HOM05D000806 ORTHO05D002320 3.0e-21 104.8 69 75.4
Cc11_g02210 Coffea canephora HOM05D000806 ORTHO05D002320 3.0e-21 104.8 69 75.4
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.1e-20 102.8 65 75.4
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.1e-20 102.8 65 75.4
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 2.0e-20 102.1 60 80.0
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 2.0e-20 102.1 60 80.0
AUR62006476 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.0e-20 102.1 60 80.0
AUR62042261 Chenopodium quinoa HOM05D000806 ORTHO05D002324 2.0e-20 102.1 60 80.0
Nn2g12581 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.6e-20 101.7 68 69.1
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 4.4e-20 100.9 71 66.2
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.4e-20 100.1 59 79.7
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.4e-20 100.1 59 79.7
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 9.7e-20 99.8 60 80.0
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 9.7e-20 99.8 60 80.0
HPP92_028392 Vanilla planifolia HOM05D000806 ORTHO05D002320 9.7e-20 99.8 72 66.7
HPP92_028399 Vanilla planifolia HOM05D000806 ORTHO05D002320 9.7e-20 99.8 72 66.7
HPP92_028409 Vanilla planifolia HOM05D000806 ORTHO05D002320 9.7e-20 99.8 72 66.7
TPR.G16839 Trifolium pratense HOM05D000806 ORTHO05D002320 1.3e-19 99.4 71 67.6
AUR62041919 Chenopodium quinoa HOM05D000806 ORTHO05D002324 1.7e-19 99.0 60 78.3
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.7e-19 99.0 61 75.4
ECA236G1817 Erigeron canadensis HOM05D000806 ORTHO05D000001 2.2e-19 98.6 60 78.3
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 6.3e-19 97.1 59 76.3
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 8.2e-19 96.7 60 76.7
Potri.005G150200 Populus trichocarpa HOM05D000806 ORTHO05D002320 1.8e-18 95.5 68 66.2
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 4.1e-18 94.4 73 65.8
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 5.3e-18 94.0 60 76.7
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 5.3e-18 94.0 56 78.6
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 5.3e-18 94.0 56 78.6
Hma1.2p1_0861F.1_g229660 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.2e-17 92.8 57 73.7
Hma1.2p1_0861F.1_g229663 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.2e-17 92.8 57 73.7
Hma1.2p1_0861F.1_g229667 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.2e-17 92.8 57 73.7
Psat2g111000 Pisum sativum HOM05D000806 ORTHO05D002320 3.5e-17 91.3 73 58.9
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 3.5e-17 91.3 59 74.6
Hund07992 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund08575 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund08809 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund19838 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund22772 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund27485 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund27570 Selenicereus undatus HOM05D000680 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund27599 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund27874 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund27955 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund27977 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28101 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28450 Selenicereus undatus HOM05D000680 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28473 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28492 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28511 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28624 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28670 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28738 Selenicereus undatus HOM05D000680 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28748 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund28838 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29142 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29174 Selenicereus undatus HOM05D000680 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29363 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29462 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29492 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29619 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29637 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29805 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29828 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund29868 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund30328 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund30362 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund30468 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund30508 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund30560 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Hund30896 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-17 90.9 67 65.7
Psat5g286240 Pisum sativum HOM05D000806 ORTHO05D002320 5.9e-17 90.5 71 62.0
Psat0s2754g0160 Pisum sativum HOM05D000806 ORTHO05D002320 7.7e-17 90.1 71 60.6
Psat0s6989g0080 Pisum sativum HOM05D000806 ORTHO05D002320 7.7e-17 90.1 71 60.6
Hund08023 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.0e-16 89.7 66 65.2
Psat0s1152g0040 Pisum sativum HOM05D000806 ORTHO05D002320 1.3e-16 89.4 71 60.6
Hund03831 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-16 89.4 67 64.2
Hund22639 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.7e-16 89.0 69 65.2
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 2.9e-16 88.2 51 78.4
Hund27490 Selenicereus undatus HOM05D000806 ORTHO05D002320 2.9e-16 88.2 67 64.2
Psat0s1586g0240 Pisum sativum HOM05D000806 ORTHO05D002320 3.8e-16 87.8 71 60.6
Psat6g140480 Pisum sativum HOM05D000806 ORTHO05D002320 5.0e-16 87.4 71 59.2
Hma1.2p1_0861F.1_g229661 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 8.5e-16 86.7 50 78.0
Hma1.2p1_0861F.1_g229662 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 8.5e-16 86.7 50 78.0
Hma1.2p1_0861F.1_g229665 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 8.5e-16 86.7 50 78.0
Hma1.2p1_0861F.1_g229669 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 8.5e-16 86.7 50 78.0
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 1.1e-15 86.3 59 71.2
Peaxi162Scf00021g00819 Petunia axillaris HOM05D000806 ORTHO05D002320 2.7e-14 81.6 69 60.9
Hma1.2p1_0242F.1_g100623 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 4.7e-14 80.9 47 80.9
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.3e-13 78.6 51 70.6
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.0e-13 78.2 46 76.1
BNapus_Darmor_BZH_scaffold_253p00210 Brassica napus HOM05D000806 ORTHO05D002320 4.0e-13 77.8 59 66.1
SMO364G0525 Selaginella moellendorffii HOM05D000806 ORTHO05D002320 4.0e-13 77.8 73 49.3
CARHR116860 Cardamine hirsuta HOM05D000806 ORTHO05D002320 5.2e-13 77.4 60 61.7
SEGI_26932 Sequoiadendron giganteum HOM05D000806 ORTHO05D002320 1.5e-12 75.9 68 51.5
Cre12.g484000 Chlamydomonas reinhardtii HOM05D000806 ORTHO05D002320 2.6e-12 75.1 70 50.0
SEGI_31685 Sequoiadendron giganteum HOM05D000806 ORTHO05D002320 2.6e-12 75.1 68 51.5
vmacro13610 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 9.7e-12 73.2 68 54.4
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.3e-11 72.8 44 77.3
vmacro13611 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 1.3e-11 72.8 68 52.9
MD02G1049400 Malus domestica HOM05D000806 ORTHO05D002320 6.3e-11 70.5 39 84.6
Nn3g19983 Nelumbo nucifera HOM05D000806 ORTHO05D002320 6.3e-11 70.5 49 67.3
Phvul.006G066900 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 4.5e-09 64.3 42 69.0
VMungo0251G1963 Vigna mungo HOM05D000806 ORTHO05D010715 4.5e-09 64.3 35 85.7
Lsat_1_v5_gn_9_98941 Lactuca sativa HOM05D000806 ORTHO05D002320 7.7e-09 63.5 38 78.9
Hund01487 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-09 63.5 66 54.5
Solyc04g039820.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 5.0e-08 60.8 34 82.4
Lalb_Chr11g0071601 Lupinus albus HOM05D000806 ORTHO05D002320 5.5e-07 57.4 31 83.9
arahy.Tifrunner.gnm1.ann1.AG95Q9 Arachis hypogaea HOM05D000806 ORTHO05D002320 2.1e-06 55.5 40 60.0
EL10As5g23489 Beta vulgaris HOM05D002547 ORTHO05D002649 2.1e-06 55.5 32 81.2
Hund04050 Selenicereus undatus HOM05D000806 ORTHO05D002320 2.7e-06 55.1 35 74.3


User provided reference genes

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