Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0278951 Rosa chinensis HOM05D003159 ORTHO05D003780 8.3e-88 327.0 167 100.0
RcHm_v2.0_Chr7g0214531 Rosa chinensis HOM05D003159 ORTHO05D003780 3.4e-57 225.3 122 94.3
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.5e-44 183.3 146 67.8
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.5e-44 183.3 146 67.8
FAN20G0704 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.5e-44 183.3 146 67.1
FAN11G2158 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.9e-44 183.0 146 67.1
FAN12G0237 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.7e-44 181.4 146 66.4
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 7.4e-44 181.0 118 78.8
FAN09G4428 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.7e-44 180.6 139 69.8
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 4.1e-42 175.3 118 76.3
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 5.3e-42 174.9 118 77.1
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 5.3e-42 174.9 118 76.3
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.2e-41 173.7 118 76.3
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 2.6e-41 172.6 118 75.4
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.0e-40 170.6 118 74.6
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 1.3e-40 170.2 118 74.6
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 1.3e-40 170.2 118 74.6
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 2.9e-40 169.1 118 73.7
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 2.9e-40 169.1 118 73.7
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 1.1e-39 167.2 118 72.9
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 2.5e-39 166.0 118 72.0
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 2.5e-39 166.0 118 72.0
Cpa.g.sc162.3 Carica papaya HOM05D003159 ORTHO05D003780 3.2e-39 165.6 118 71.2
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 4.2e-39 165.2 118 70.3
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 4.2e-39 165.2 118 72.0
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 5.5e-39 164.9 118 71.2
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 7.2e-39 164.5 118 70.3
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 1.6e-38 163.3 118 72.0
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 2.1e-38 162.9 118 70.3
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 3.6e-38 162.2 118 71.2
FAN12G4313 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.6e-38 162.2 111 73.9
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 4.6e-38 161.8 118 69.5
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 4.6e-38 161.8 118 68.6
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 4.6e-38 161.8 118 70.3
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 1.8e-37 159.8 118 68.6
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.8e-37 159.8 118 69.5
Sabra19G0025800 Salix brachista HOM05D003159 ORTHO05D003780 1.8e-37 159.8 112 73.2
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 1.8e-37 159.8 118 67.8
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.8e-37 159.8 118 68.6
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 2.3e-37 159.5 118 69.5
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 2.3e-37 159.5 118 67.8
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 2.3e-37 159.5 118 70.3
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 3.9e-37 158.7 118 67.8
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 3.9e-37 158.7 121 66.9
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 3.9e-37 158.7 118 66.9
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 5.1e-37 158.3 118 67.8
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 5.1e-37 158.3 118 67.8
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 6.7e-37 157.9 118 66.9
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 6.7e-37 157.9 118 67.8
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 6.7e-37 157.9 118 68.6
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 8.8e-37 157.5 118 66.1
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.5e-36 156.8 118 66.1
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 1.5e-36 156.8 118 66.1
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.5e-36 156.8 118 66.1
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.5e-36 156.8 118 66.1
Actinidia06676 Actinidia chinensis HOM05D003159 ORTHO05D003780 1.9e-36 156.4 118 67.8
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 1.9e-36 156.4 118 65.3
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.9e-36 156.4 118 66.1
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.9e-36 156.4 118 66.1
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.9e-36 156.4 118 66.1
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 2.5e-36 156.0 118 66.9
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 2.5e-36 156.0 127 62.2
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 3.3e-36 155.6 118 66.9
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 4.3e-36 155.2 118 65.3
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 4.3e-36 155.2 118 66.9
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 5.7e-36 154.8 118 66.1
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 7.4e-36 154.5 118 64.4
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 7.4e-36 154.5 118 64.4
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 9.7e-36 154.1 118 65.3
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 9.7e-36 154.1 118 66.1
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 1.3e-35 153.7 118 65.3
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 1.3e-35 153.7 118 65.3
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.3e-35 153.7 118 65.3
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.3e-35 153.7 118 65.3
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 1.3e-35 153.7 118 65.3
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 1.3e-35 153.7 118 65.3
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 1.3e-35 153.7 118 65.3
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 1.7e-35 153.3 112 68.8
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 1.7e-35 153.3 118 64.4
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.7e-35 153.3 118 65.3
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 2.2e-35 152.9 118 64.4
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.2e-35 152.9 122 63.1
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.8e-35 152.5 118 65.3
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.8e-35 152.5 130 63.1
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 3.7e-35 152.1 118 65.3
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 3.7e-35 152.1 118 64.4
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 3.7e-35 152.1 118 64.4
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 4.8e-35 151.8 118 65.3
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 4.8e-35 151.8 118 64.4
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 6.3e-35 151.4 118 65.3
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 6.3e-35 151.4 112 67.9
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 8.2e-35 151.0 118 65.3
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 8.2e-35 151.0 118 64.4
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 8.2e-35 151.0 118 65.3
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 1.4e-34 150.2 112 67.9
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.8e-34 149.8 118 63.6
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.8e-34 149.8 122 62.3
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.8e-34 149.8 118 65.3
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.8e-34 149.8 118 64.4
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 1.8e-34 149.8 138 59.4
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.8e-34 149.8 136 58.8
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 2.4e-34 149.4 119 63.9
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 2.4e-34 149.4 119 63.9
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.4e-34 149.4 118 64.4
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.4e-34 149.4 118 64.4
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 3.1e-34 149.1 118 63.6
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 4.1e-34 148.7 118 64.4
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 9.1e-34 147.5 121 64.5
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.2e-33 147.1 118 63.6
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 1.2e-33 147.1 126 60.3
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 1.5e-33 146.7 119 63.0
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 1.5e-33 146.7 118 61.0
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 7.7e-33 144.4 118 61.9
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 1.3e-32 143.7 118 59.3
CDE05G1140 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.7e-32 143.3 134 56.7
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 2.2e-32 142.9 118 58.5
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 5.0e-32 141.7 118 60.2
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 5.0e-32 141.7 118 61.9
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 5.0e-32 141.7 118 61.9
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 6.5e-32 141.4 118 62.7
PSO782G2873 Papaver somniferum HOM05D003159 ORTHO05D003780 8.5e-32 141.0 118 61.9
Zm00001eb284760 Zea mays HOM05D003159 ORTHO05D003780 8.5e-32 141.0 118 57.6
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 1.4e-31 140.2 118 61.9
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 3.2e-31 139.0 124 58.1
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 7.2e-31 137.9 118 57.6
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 1.2e-30 137.1 118 56.8
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 4.7e-30 135.2 118 55.9
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 1.0e-29 134.0 101 68.3
CSS0018975 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.5e-28 130.2 111 61.3
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 4.8e-27 125.2 113 55.8
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 6.3e-27 124.8 118 53.4
Peaxi162Scf00135g01116 Petunia axillaris HOM05D003159 ORTHO05D003780 1.4e-26 123.6 104 61.5
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 2.4e-26 122.9 118 51.7
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 45.8
FAN02G3581 Fragaria x ananassa HOM05D001720 ORTHO05D001813 2.5e-23 112.8 115 54.8
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 2.5e-23 112.8 113 53.1
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 4.2e-23 112.1 86 66.3
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 2.1e-22 109.8 100 54.0
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 3.9e-21 105.5 125 51.2
Lalb_Chr06g0166741 Lupinus albus HOM05D003159 ORTHO05D003780 5.2e-21 105.1 86 61.6
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 5.2e-21 105.1 101 49.5
Ciclev10003992m.g Citrus clementina HOM05D003159 ORTHO05D003780 5.7e-20 101.7 86 57.0
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 6.3e-19 98.2 111 48.6
DCAR_028952 Daucus carota HOM05D003159 ORTHO05D003780 2.4e-18 96.3 86 53.5
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 2.6e-17 92.8 59 74.6
Atru.chr2.869 Acer truncatum HOM05D003159 ORTHO05D003780 5.9e-17 91.7 74 64.9
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 5.0e-16 88.6 119 40.3
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 4.0e-13 79.0 82 51.2
CSS0009274 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 8.8e-13 77.8 50 68.0
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 1.5e-12 77.0 89 47.2
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 2.6e-12 76.3 52 69.2
AUR62033001 Chenopodium quinoa HOM05D003159 ORTHO05D044021 9.7e-12 74.3 65 58.5
SEGI_11174 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 1.3e-11 73.9 47 78.7
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 2.2e-11 73.2 101 38.6
SHI06091 Sapria himalayana HOM05D003159 ORTHO05D003780 2.8e-11 72.8 53 62.3
SEGI_17525 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 1.1e-10 70.9 56 57.1
Nitab4.5_0000261g0140 Nicotiana tabacum HOM05D003159 ORTHO05D003780 9.1e-10 67.8 46 65.2


User provided reference genes

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